PTBP2 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000018950 T42180_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.764
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.764
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000022138 RRM 57 113
ENSTNIP00000022138 RRM 175 241
ENSTNIP00000022138 RRM 329 395
ENSTNIP00000022138 RRM 446 510

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.868
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.883
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.704
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.700
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.757
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.764
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.868
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.745
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.708
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.868
PTBP2 Danio rerio ENSDARG00000015901 I 0.895
ptbp1a Danio rerio ENSDARG00000019362 I 0.731
ptbp1b Danio rerio ENSDARG00000031907 I 0.730
ROD1 Danio rerio ENSDARG00000043757 I 0.707
PTBP2 Dasypus novemcinctus ENSDNOG00000017687 N 0.737
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.702
ROD1 Equus caballus ENSECAG00000021243 I 0.714
PTBP1 Equus caballus ENSECAG00000018845 I 0.749
LOC100057336 Equus caballus ENSECAG00000015783 I 0.872
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.757
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.876
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.923
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.708
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.872
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.712
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.868
ROD1 Homo sapiens ENSG00000119314 I 0.712
PTBP2 Homo sapiens ENSG00000117569 I 0.872
PTBP1 Homo sapiens ENSG00000011304 D 0.764
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.708
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.868
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.703
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.722
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.868
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.712
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.757
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.876
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.757
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.787
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.864
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.708
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.757
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.745
Rod1 Mus musculus ENSMUSG00000028382 I 0.704
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.868
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.849
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.714
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.872
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.738
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.868
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.708
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.900
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.888
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.707
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.712
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.764
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.868
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.712
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.872
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.764
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.753
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.745
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.872
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.704
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.775
ROD1 Sus scrofa ENSSSCG00000005466 I 0.714
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.757
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.875
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.761
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.868
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.713
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.753
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.868
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.868
AAF00041 Xenopus laevis AAF00041 I 0.745
AAH45068 Xenopus laevis AAH45068 I 0.753
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.704