B9GPN6_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0002s00610 T45450_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.882
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s00610.1 RRM 34 101

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

117 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.739
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.754
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.912
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.812
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.882
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.768
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.797
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.725
PK15672.1 Cannabis sativa PK15672.1 I 0.812
PK21213.1 Cannabis sativa PK21213.1 I 0.926
PK14266.1 Cannabis sativa PK14266.1 I 0.838
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.725
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.783
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.824
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.941
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.824
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.824
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.838
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.912
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.783
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.721
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.926
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.797
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.706
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.783
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.838
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.797
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.838
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.853
MDP0000744398 Malus x domestica MDP0000744398 I 0.853
MDP0000118777 Malus x domestica MDP0000118777 I 0.754
MDP0000134468 Malus x domestica MDP0000134468 I 0.779
MDP0000138486 Malus x domestica MDP0000138486 I 0.853
MDP0000184420 Malus x domestica MDP0000184420 I 0.868
MDP0000857317 Malus x domestica MDP0000857317 I 0.754
MDP0000233609 Malus x domestica MDP0000233609 I 0.750
MDP0000284454 Malus x domestica MDP0000284454 I 0.868
MDP0000488395 Malus x domestica MDP0000488395 I 0.853
MDP0000548950 Malus x domestica MDP0000548950 I 0.853
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.812
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.838
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.971
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.812
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.794
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.824
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.838
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.838
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.941
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.710
CU179634_3 Medicago truncatula CU179634_3 I 0.853
mgf017214m Mimulus guttatus mgf017214m I 0.956
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.783
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.853
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.838
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.971
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.824
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.812
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.838
ppa009964m Prunus persica ppa009964m I 0.868
ppa009716m Prunus persica ppa009716m I 0.912
ppa016222m Prunus persica ppa016222m I 0.838
ppa018603m Prunus persica ppa018603m I 0.768
ppa018926m Prunus persica ppa018926m I 0.768
30076.m004440 Ricinus communis 30076.m004440 I 0.838
29908.m006046 Ricinus communis 29908.m006046 I 0.779
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.838
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.809
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.809