Pabpc1l (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000012750 T41086_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.738
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.738
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.738
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000052046 RRM 13 83
ENSRNOP00000052046 RRM 101 169
ENSRNOP00000052046 RRM 193 262
ENSRNOP00000052046 RRM 296 364

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

118 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.957
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.896
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.892
PABPC1L Homo sapiens ENSG00000101104 I 0.892
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.892
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.889
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.889
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.885
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.882
PABPC1L Bos taurus ENSBTAG00000016849 I 0.882
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.878
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.875
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.875
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.875
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.871
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.871
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.864
LOC100070836 Equus caballus ENSECAG00000022681 I 0.860
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.860
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.846
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.842
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.842
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.824
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.814
PABPC1L Gallus gallus ENSGALG00000004123 I 0.792
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.792
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.792
AAK29408 Xenopus laevis AAK29408 I 0.785
Q98SP8 Xenopus laevis Q98SP8 I 0.785
AAH80020 Xenopus laevis AAH80020 I 0.785
Q6GR16 Xenopus laevis Q6GR16 I 0.781
AAH71118 Xenopus laevis AAH71118 I 0.781
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.771
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.767
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.756
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.756
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.756
PABPC1 Homo sapiens ENSG00000070756 D 0.756
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.756
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.756
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.756
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.756
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.756
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.756
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.756
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.756
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.753
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.753
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.753
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.753
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.753
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.753
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.749
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.749
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.746
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.746
PABPC4 Homo sapiens ENSG00000090621 D 0.746
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.746
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.746
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.746
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.746
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.746
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.746
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.746
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.746
pabpc1b Danio rerio ENSDARG00000021140 I 0.743
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.742
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.742
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.742
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.742
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.742
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.742
AAI08463 Xenopus laevis AAI08463 I 0.742
AAH72110 Xenopus laevis AAH72110 I 0.742
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.742
Q6IP09 Xenopus laevis Q6IP09 I 0.742
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.742
Gm10110 Mus musculus ENSMUSG00000062093 I 0.742
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.742
LOC100054235 Equus caballus ENSECAG00000009396 I 0.742
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.742
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.742
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.738
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.738
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.738
pabpc1l Danio rerio ENSDARG00000002597 I 0.738
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.738
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.738
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.738
pabpc1a Danio rerio ENSDARG00000017219 I 0.735
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.735
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.735
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.735
P20965 Xenopus laevis P20965 I 0.731
CAA40721 Xenopus laevis CAA40721 I 0.731
AAH52100 Xenopus laevis AAH52100 I 0.731
PABPC4 Gallus gallus ENSGALG00000003800 I 0.731
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.731
AAH73435 Xenopus laevis AAH73435 I 0.731
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.728
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.728
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.728
AAA60936 Xenopus laevis AAA60936 I 0.728
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.728
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.724
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.724
pabpc4 Danio rerio ENSDARG00000059259 I 0.724
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.721
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.721
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.720
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.717
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.717
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.716
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.713
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.710
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.710
PABPC3 Homo sapiens ENSG00000151846 D 0.710
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.710