ENSCAFG00000018456 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000018456 T35180_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.812
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.812
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.812
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.792
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000028185 RRM 17 84
ENSCAFP00000028185 RRM 106 176

Links

Other RRM family RBPs
Other Canis familiaris RBPs

163 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
2217_YCL059C Saccharomyces paradoxus 2217_YCL059C N 0.000
2245_YCL059C Saccharomyces mikatae 2245_YCL059C N 0.000
2380_YCL059C Saccharomyces bayanus 2380_YCL059C N 0.000
A7TFC5_VANPO Vanderwaltozyma polyspora A7TFC5_VANPO N 0.000
AMAG_07778 Allomyces macrogynus AMAG_07778 N 0.000
AMAG_09721 Allomyces macrogynus AMAG_09721 N 0.000
Cd36_10710 Candida dubliniensis Cd36_10710 N 0.000
CLUG_04903 Candida lusitaniae CLUG_04903 N 0.000
CTRG_04103 Candida tropicalis CTRG_04103 N 0.000
DEHA0E14685g Debaryomyces hansenii DEHA0E14685g N 0.000
estExt_fgenesh2_pg.C_210023 Monosiga brevicollis estExt_fgenesh2_pg.C_210023 N 0.000
estExt_fgenesh3_pg.C_140192 Chlorella NC64A estExt_fgenesh3_pg.C_140192 N 0.000
estExt_Genewise1.C_20589 Coccomyxa C 169 estExt_Genewise1.C_20589 N 0.000
estExt_Genewise1Plus.C_20668 Chlorella vulgaris estExt_Genewise1Plus.C_20668 N 0.000
e_gw1.35.542.1 Selaginella moellendorfii e_gw1.35.542.1 N 0.000
e_gwh1.2.1.2136.1 Pichia stipitis e_gwh1.2.1.2136.1 N 0.000
fgenesh1_pm.00866_#_279 Aspergillus carbonarius fgenesh1_pm.00866_#_279 N 0.000
KLLA0C00506g Kluyveromyces lactis KLLA0C00506g N 0.000
Kwal_13011 Kluyveromyces waltii Kwal_13011 N 0.000
LELG_00899 Lodderomyces elongisporus LELG_00899 N 0.000
MDP0000130613 Malus x domestica MDP0000130613 N 0.000
MDP0000221204 Malus x domestica MDP0000221204 N 0.000
KRR1 Candida albicans orf19.661 N 0.000
pasa_Sanger_mRNA6968 Chlamydomonas reinhardtii pasa_Sanger_mRNA6968 N 0.000
Pc15g00270 Penicillium chrysogenum Pc15g00270 N 0.000
PGUG_03304 Candida guilliermondii PGUG_03304 N 0.000
PK22510.1 Cannabis sativa PK22510.1 N 0.000
SAKL0C00484g Lachancea kluyveri SAKL0C00484g N 0.000
Skud_Contig2065.14 Saccharomyces kudriavzevii Skud_Contig2065.14 N 0.000
mis3 Schizosaccharomyces pombe SPBC25B2.05 N 0.000
XP_002158002.1 Hydra magnipapillata XP_002158002.1 N 0.000
KRR1 Saccharomyces cerevisiae YCL059C N 0.000