celf5 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000071375 T36216_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.890
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.810
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.787
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000087744 RRM 80 149
ENSDARP00000087744 RRM 168 236
ENSDARP00000087744 RRM 445 515

Links

Other RRM family RBPs
Other Danio rerio RBPs

96 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA81375 Xenopus laevis AAA81375 I 0.848
AAH46942 Xenopus laevis AAH46942 I 0.838
AAH57704 Xenopus laevis AAH57704 I 0.848
AAH72134 Xenopus laevis AAH72134 I 0.848
ACH69784 Xenopus laevis ACH69784 I 0.801
ACH69785 Xenopus laevis ACH69785 I 0.881
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.824
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.810
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.890
Bm1_27610 Brugia malayi Bm1_27610 I 0.795
unc-75 Caenorhabditis elegans C17D12.2 D 0.744
CBG15358 Caenorhabditis briggsae CBG15358 I 0.749
CRE09771 Caenorhabditis remanei CRE09771 I 0.749
A6H776_BOVIN Bos taurus ENSBTAG00000004940 I 0.700
CELF6 Bos taurus ENSBTAG00000014092 I 0.810
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.824
CELF5 Bos taurus ENSBTAG00000021774 I 0.711
CELF3 Canis familiaris ENSCAFG00000012794 I 0.824
CELF5 Canis familiaris ENSCAFG00000019263 I 0.724
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.735
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.824
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.810
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.791
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.824
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.720
CELF3 Danio rerio ENSDARG00000006983 I 0.819
celf3 Danio rerio ENSDARG00000034668 I 0.848
celf4 Danio rerio ENSDARG00000070045 I 0.729
ENSDARG00000076682 Danio rerio ENSDARG00000076682 I 0.703
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.762
Celf5 Dipodomys ordii ENSDORG00000005915 I 0.700
CELF3 Equus caballus ENSECAG00000020365 I 0.824
CELF5 Echinops telfairi ENSETEG00000016221 I 0.705
CELF6 Felis catus ENSFCAG00000016249 I 0.810
BRUNOL4 Homo sapiens ENSG00000101489 D 0.791
BRUNOL6 Homo sapiens ENSG00000140488 D 0.810
CELF3 Homo sapiens ENSG00000159409 I 0.824
BRUNOL5 Homo sapiens ENSG00000161082 D 0.890
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.843
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.787
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.857
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.791
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.810
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.824
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.797
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.890
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.824
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.768
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.733
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.814
HEXA Macaca mulatta ENSMMUG00000010687 I 0.810
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.729
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.862
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.824
Celf4 Mus musculus ENSMUSG00000024268 I 0.886
Celf3 Mus musculus ENSMUSG00000028137 I 0.824
Celf6 Mus musculus ENSMUSG00000032297 I 0.814
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.777
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.824
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.724
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.890
CELF5 Otolemur garnettii ENSOGAG00000014161 I 0.705
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.795
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.716
CELF3 Oryzias latipes ENSORLG00000002630 I 0.720
CELF5 Oryzias latipes ENSORLG00000004600 I 0.986
CELF4 Oryzias latipes ENSORLG00000008913 I 0.895
CELF3 Oryzias latipes ENSORLG00000010447 I 0.817
CELF3 Procavia capensis ENSPCAG00000001623 I 0.805
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.805
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.796
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.824
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.871
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.795
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.810
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.791
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.719
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.814
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.824
CELF6 Sus scrofa ENSSSCG00000001928 I 0.810
CELF3 Sus scrofa ENSSSCG00000006618 I 0.810
CELF5 Sus scrofa ENSSSCG00000013476 I 0.716
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.733
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.862
CELF4 Tetraodon nigroviridis ENSTNIG00000010679 I 0.706
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.843
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.881
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.719
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.787
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.871
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.895
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.843
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.838
Q91579 Xenopus laevis Q91579 I 0.848
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.736
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.736