CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF5
(
Oryzias latipes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSORLG00000004600
T40121_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
BRUNOL5
M157_0.6
Homo sapiens
UGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00166
0.895
BRUNOL6
M178_0.6
Homo sapiens
UGUGDKG
RNAcompete
Ray et al.(2013)
RNCMPT00187
0.810
BRUNOL4
M004_0.6
Homo sapiens
KGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00004
0.782
unc-75
M079_0.6
Caenorhabditis elegans
UGUUGUD
RNAcompete
Ray et al.(2013)
RNCMPT00081
0.739
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000005783
RRM
24
93
LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNALHEQKTLPGMT
ENSORLP00000005783
RRM
112
180
LFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSAHTEAQSAIGALHGSQTMPGAS
ENSORLP00000005783
RRM
384
454
LFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Oryzias latipes
RBPs
94 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG1340
Drosophila melanogaster
FBgn0039797
N
0.000
GM12901
Drosophila sechellia
FBgn0167833
N
0.000
GM13442
Drosophila sechellia
FBgn0168373
N
0.000
GJ19028
Drosophila virilis
FBgn0206174
N
0.000
GJ24240
Drosophila virilis
FBgn0211322
N
0.000
GK14152
Drosophila willistoni
FBgn0216158
N
0.000
GK25675
Drosophila willistoni
FBgn0227634
N
0.000
GE10899
Drosophila yakuba
FBgn0228732
N
0.000
GE17274
Drosophila yakuba
FBgn0234750
N
0.000
GL20267
Drosophila persimilis
FBgn0157862
N
0.000
GL13513
Drosophila persimilis
FBgn0151118
N
0.000
GI21487
Drosophila mojavensis
FBgn0144217
N
0.000
GA12257-RA
Drosophila pseudoobscura
FBgn0072303
N
0.000
GA18178-RA
Drosophila pseudoobscura
FBgn0078185
N
0.000
GF19517
Drosophila ananassae
FBgn0096524
N
0.000
GF22920
Drosophila ananassae
FBgn0099914
N
0.000
GG11771
Drosophila erecta
FBgn0104066
N
0.000
GG17966
Drosophila erecta
FBgn0110185
N
0.000
GH14211
Drosophila grimshawi
FBgn0121687
N
0.000
GH22433
Drosophila grimshawi
FBgn0129891
N
0.000
FBgn0262734
Drosophila melanogaster
FBgn0262734
N
0.000