ENSCJAG00000007639 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000007639 T35540_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.832
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.832
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.832
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.811
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000014149 RRM 9 78
ENSCJAP00000014149 RRM 100 171

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

204 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.722
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.812
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.799
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.715
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.740
LOC781499 Bos taurus ENSBTAG00000021580 I 0.710
LOC785445 Bos taurus ENSBTAG00000025621 I 0.771
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.812
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.738
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.812
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.703
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.785
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.778
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.717
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.785
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.806
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.792
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.736
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.824
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.789
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.778
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.764
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.750
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.778
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.812
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.750
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.701
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.757
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.778
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.785
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.785
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.736
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.812
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.812
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.750
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.710
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.792
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.799
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.729
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.754
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.783
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.778
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.735
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.771
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.764
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.812
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.750
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.782
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.736
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.743
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.768
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.761
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.775
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.750
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.743
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.804
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.727
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.719
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.775
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.783
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.782
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.705
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.782
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.747
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.736
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.789
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.712
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.736
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.710
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.810
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.710
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.768
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.792
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.710
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.710
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.812
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.710
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.750
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.743
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.812
LOC100054206 Equus caballus ENSECAG00000006699 I 0.831
LOC100066794 Equus caballus ENSECAG00000023237 I 0.708
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.785
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.701
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.722
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.799
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.812
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.708
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.708
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.736
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.812
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.785
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.729
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.722
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.812
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.710
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.792
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.719
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.812
HNRNPA3 Homo sapiens ENSG00000170144 I 0.710
HNRNPA1 Homo sapiens ENSG00000135486 D 0.812
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.792
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.806
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.799
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.713
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.806
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.799
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.740
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.703
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.812
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.796
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.806
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.782
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.722
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.728
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.806
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.757
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.757
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.705
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.710
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.702
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.710
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.708
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.785
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.768
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.710
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.768
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.710
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.760
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.785
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.812
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.710
Gm8991 Mus musculus ENSMUSG00000059179 I 0.708
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.812
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.710
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.803
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.799
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.806
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.792
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.703
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.806
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.792
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.812
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.812
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.812
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.799
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.799
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.806
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.764
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.812
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.729
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.806
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.812
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.812
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.812
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.710
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.812
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.792
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.712
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.746
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.710
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.812
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.778
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.701
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.812
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.785
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.785
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.710
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.771
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.757
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.750
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.743
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.710
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.757
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.750
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.757
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.710
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.743
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.812
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.708
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.701
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.785
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.812
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.764
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.710
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.812
P51968 Xenopus laevis P51968 I 0.708
CBF67578 Xenopus laevis CBF67578 I 0.715
CBF67672 Xenopus laevis CBF67672 I 0.743
CBU92428 Xenopus laevis CBU92428 I 0.736
CBU92451 Xenopus laevis CBU92451 I 0.715
CBU92546 Xenopus laevis CBU92546 I 0.743
P17130 Xenopus laevis P17130 I 0.736
CBF67555 Xenopus laevis CBF67555 I 0.736
AAI69881 Xenopus laevis AAI69881 I 0.715
AAH72090 Xenopus laevis AAH72090 I 0.743
AAH45260 Xenopus laevis AAH45260 I 0.736
AAA49950 Xenopus laevis AAA49950 I 0.715
AAA49949 Xenopus laevis AAA49949 I 0.708
AAA49742 Xenopus laevis AAA49742 I 0.736
AAA49741 Xenopus laevis AAA49741 I 0.736
P51992 Xenopus laevis P51992 I 0.715
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.743
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.715