GSVIVG00013430001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00013430001 T44661_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.765
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00013430001 RRM 34 92

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

93 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.000
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.000
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.794
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.000
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.765
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.000
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.000
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.000
PK15672.1 Cannabis sativa PK15672.1 I 0.710
PK21213.1 Cannabis sativa PK21213.1 I 0.851
PK14266.1 Cannabis sativa PK14266.1 I 0.750
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.000
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.000
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.735
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.853
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.765
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.765
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.735
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.836
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.000
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.000
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.836
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.000
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.000
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.000
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.750
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.710
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.779
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.934
MDP0000744398 Malus x domestica MDP0000744398 I 0.765
MDP0000118777 Malus x domestica MDP0000118777 I 0.000
MDP0000134468 Malus x domestica MDP0000134468 I 0.721
MDP0000138486 Malus x domestica MDP0000138486 I 0.806
MDP0000184420 Malus x domestica MDP0000184420 I 0.706
MDP0000857317 Malus x domestica MDP0000857317 I 0.000
MDP0000233609 Malus x domestica MDP0000233609 I 0.706
MDP0000284454 Malus x domestica MDP0000284454 I 0.706
MDP0000488395 Malus x domestica MDP0000488395 I 0.765
MDP0000548950 Malus x domestica MDP0000548950 I 0.765
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.710
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.779
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.794
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.710
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.735
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.750
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.721
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.735
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.836
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.000
CU179634_3 Medicago truncatula CU179634_3 I 0.806
mgf017214m Mimulus guttatus mgf017214m I 0.838
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.000
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.765
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.750
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.794
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.735
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.754
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.809
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.750
ppa009964m Prunus persica ppa009964m I 0.765
ppa009716m Prunus persica ppa009716m I 0.765
ppa016222m Prunus persica ppa016222m I 0.750
ppa018603m Prunus persica ppa018603m I 0.000
ppa018926m Prunus persica ppa018926m I 0.000
30076.m004440 Ricinus communis 30076.m004440 I 0.750
29908.m006046 Ricinus communis 29908.m006046 I 0.721
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.765
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.750
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.721