PABPC1L (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000003553 T37980_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.780
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.780
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.780
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.766
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.738
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000002964 RRM 13 83
ENSLAFP00000002964 RRM 101 169
ENSLAFP00000002964 RRM 193 262
ENSLAFP00000002964 RRM 296 364

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA60936 Xenopus laevis AAA60936 I 0.774
AAH52100 Xenopus laevis AAH52100 I 0.778
AAH71118 Xenopus laevis AAH71118 I 0.824
AAH72110 Xenopus laevis AAH72110 I 0.789
AAH73435 Xenopus laevis AAH73435 I 0.778
AAH80020 Xenopus laevis AAH80020 I 0.828
AAI08463 Xenopus laevis AAI08463 I 0.789
AAK29408 Xenopus laevis AAK29408 I 0.828
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.781
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.946
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.720
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.000
CAA40721 Xenopus laevis CAA40721 I 0.778
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.728
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.846
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.799
PABPC1L Bos taurus ENSBTAG00000016849 I 0.943
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.781
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.803
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.785
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.946
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.785
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.803
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.918
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.778
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.781
pabpc1l Danio rerio ENSDARG00000002597 I 0.796
pabpc1a Danio rerio ENSDARG00000017219 I 0.781
pabpc1b Danio rerio ENSDARG00000021140 I 0.779
pabpc4 Danio rerio ENSDARG00000059259 I 0.771
LOC100054235 Equus caballus ENSECAG00000009396 I 0.785
LOC100056021 Equus caballus ENSECAG00000020699 I 0.000
LOC100070836 Equus caballus ENSECAG00000022681 I 0.939
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.785
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.918
PABPC1 Homo sapiens ENSG00000070756 D 0.803
PABPC4 Homo sapiens ENSG00000090621 D 0.789
PABPC1L Homo sapiens ENSG00000101104 I 0.935
PABPC3 Homo sapiens ENSG00000151846 D 0.756
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.000
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.781
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.792
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.789
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.756
PABPC4 Gallus gallus ENSGALG00000003800 I 0.778
PABPC1L Gallus gallus ENSGALG00000004123 I 0.846
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.789
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.935
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.785
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.803
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.875
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.849
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.785
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.914
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.753
PABPC4 Myotis lucifugus ENSMLUG00000012068 I 0.000
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.785
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.939
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.803
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.771
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.793
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.724
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.000
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.896
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.781
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.771
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.778
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.799
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.760
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.763
Gm10110 Mus musculus ENSMUSG00000062093 I 0.781
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.799
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.778
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.785
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.921
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.803
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.803
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.000
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.803
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.921
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.785
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.799
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.789
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.753
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.753
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.000
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.789
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.785
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.935
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.803
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.789
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.932
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.799
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.763
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.925
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.803
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.799
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.767
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.785
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.771
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.763
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.785
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.803
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.925
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.000
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.778
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.821
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.799
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.785
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.765
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.760
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.707
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.785
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.767
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.781
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.799
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.785
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.900
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.803
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.792
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.806
ISCW014211 Ixodes scapularis ISCW014211 I 0.000
P20965 Xenopus laevis P20965 I 0.778
PHUM617090 Pediculus humanus PHUM617090 I 0.000
Q6GR16 Xenopus laevis Q6GR16 I 0.824
Q6IP09 Xenopus laevis Q6IP09 I 0.789
Q98SP8 Xenopus laevis Q98SP8 I 0.828