PABPC1L (Ochotona princeps)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOPRG00000011846 T40020_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.777
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.777
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.777
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.762
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000010811 RRM 13 83
ENSOPRP00000010811 RRM 101 169
ENSOPRP00000010811 RRM 193 262
ENSOPRP00000010811 RRM 296 364

Links

Other RRM family RBPs
Other Ochotona princeps RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL014030 Aedes aegypti AAEL014030 N 0.000
AAH68669 Xenopus laevis AAH68669 N 0.000
AGAP007114 Anopheles gambiae AGAP007114 N 0.000
amel4_ncbi_hmm20485 Apis mellifera amel4_ncbi_hmm20485 N 0.000
Ame_R004849 Ailuropoda melanoleuca Ame_R004849 N 0.000
Ame_R019935 Ailuropoda melanoleuca Ame_R019935 N 0.000
CPIJ008431 Culex quinquefasciatus CPIJ008431 N 0.000
CpipJ_CPIJ008431 Culex pipiens CpipJ_CPIJ008431 N 0.000
ENSACAG00000015271 Anolis carolinensis ENSACAG00000015271 N 0.000
RC3H1 Bos taurus ENSBTAG00000020094 N 0.000
RC3H2 Bos taurus ENSBTAG00000023867 N 0.000
RC3H1 Canis familiaris ENSCAFG00000014434 N 0.000
RC3H2 Canis familiaris ENSCAFG00000020250 N 0.000
RC3H1 Callithrix jacchus ENSCJAG00000009106 N 0.000
RC3H2 Callithrix jacchus ENSCJAG00000020050 N 0.000
RC3H1 Cavia porcellus ENSCPOG00000004349 N 0.000
RC3H2 Cavia porcellus ENSCPOG00000008511 N 0.000
rc3h1 Danio rerio ENSDARG00000062550 N 0.000
RC3H2 Danio rerio ENSDARG00000063050 N 0.000
si:dkey-60b12.1 Danio rerio ENSDARG00000063182 N 0.000
Rc3h1 Dipodomys ordii ENSDORG00000004855 N 0.000
Rc3h2 Dipodomys ordii ENSDORG00000006398 N 0.000
LOC100052499 Equus caballus ENSECAG00000021208 N 0.000
RC3H2 Equus caballus ENSECAG00000022176 N 0.000
RC3H1 Erinaceus europaeus ENSEEUG00000014861 N 0.000
RC3H1 Echinops telfairi ENSETEG00000012064 N 0.000
RC3H2 Homo sapiens ENSG00000056586 N 0.000
RC3H1 Homo sapiens ENSG00000135870 N 0.000
ENSGACG00000013855 Gasterosteus aculeatus ENSGACG00000013855 N 0.000
RC3H2 Gasterosteus aculeatus ENSGACG00000017369 N 0.000
RC3H2 Gallus gallus ENSGALG00000001253 N 0.000
Q5F439_CHICK Gallus gallus ENSGALG00000004587 N 0.000
RC3H1 Gorilla gorilla ENSGGOG00000005735 N 0.000
RC3H2 Gorilla gorilla ENSGGOG00000017062 N 0.000
RC3H2 Loxodonta africana ENSLAFG00000003521 N 0.000
RC3H1 Loxodonta africana ENSLAFG00000004367 N 0.000
RC3H2 Macropus eugenii ENSMEUG00000001299 N 0.000
RC3H2 Meleagris gallopavo ENSMGAG00000007984 N 0.000
RC3H1 Microcebus murinus ENSMICG00000003000 N 0.000
RC3H1 Myotis lucifugus ENSMLUG00000011127 N 0.000
RC3H2 Myotis lucifugus ENSMLUG00000013992 N 0.000
RC3H1 Macaca mulatta ENSMMUG00000000630 N 0.000
RC3H2 Macaca mulatta ENSMMUG00000021134 N 0.000
RC3H1 Monodelphis domestica ENSMODG00000004289 N 0.000
RC3H2 Monodelphis domestica ENSMODG00000019725 N 0.000
Rc3h1 Mus musculus ENSMUSG00000040423 N 0.000
Rc3h2 Mus musculus ENSMUSG00000075376 N 0.000
RC3H1 Ornithorhynchus anatinus ENSOANG00000000924 N 0.000
RC3H2 Ornithorhynchus anatinus ENSOANG00000008194 N 0.000
RC3H1 Oryctolagus cuniculus ENSOCUG00000004930 N 0.000
RC3H2 Oryctolagus cuniculus ENSOCUG00000008804 N 0.000
RC3H2 Otolemur garnettii ENSOGAG00000010678 N 0.000
RC3H2 Ochotona princeps ENSOPRG00000000135 N 0.000
RC3H1 Ochotona princeps ENSOPRG00000013068 N 0.000
RC3H2 Oryzias latipes ENSORLG00000010018 N 0.000
ENSORLG00000016041 Oryzias latipes ENSORLG00000016041 N 0.000
RC3H2 Procavia capensis ENSPCAG00000010154 N 0.000
RC3H1 Procavia capensis ENSPCAG00000010775 N 0.000
ENSPPYG00000000490 Pongo pygmaeus ENSPPYG00000000490 N 0.000
RC3H1 Pan troglodytes ENSPTRG00000001702 N 0.000
RC3H2 Pan troglodytes ENSPTRG00000021339 N 0.000
RC3H1 Pteropus vampyrus ENSPVAG00000007593 N 0.000
LOC680586 Rattus norvegicus ENSRNOG00000002750 N 0.000
Rc3h2 Rattus norvegicus ENSRNOG00000009196 N 0.000
ENSSARG00000004660 Sorex araneus ENSSARG00000004660 N 0.000
RC3H2 Sorex araneus ENSSARG00000012329 N 0.000
RC3H2 Sus scrofa ENSSSCG00000005575 N 0.000
RC3H1 Sus scrofa ENSSSCG00000015498 N 0.000
RC3H2 Spermophilus tridecemlineatus ENSSTOG00000010655 N 0.000
RC3H1 Tupaia belangeri ENSTBEG00000005015 N 0.000
RC3H2 Tupaia belangeri ENSTBEG00000009622 N 0.000
RC3H1 Taeniopygia guttata ENSTGUG00000004090 N 0.000
RC3H2 Taeniopygia guttata ENSTGUG00000006889 N 0.000
XP_002198236.1 Taeniopygia guttata ENSTGUG00000014803 N 0.000
RC3H2 Tetraodon nigroviridis ENSTNIG00000004942 N 0.000
ENSTNIG00000015269 Tetraodon nigroviridis ENSTNIG00000015269 N 0.000
RC3H2 Takifugu rubripes ENSTRUG00000003364 N 0.000
ENSTRUG00000008347 Takifugu rubripes ENSTRUG00000008347 N 0.000
RC3H2 Tarsius syrichta ENSTSYG00000000961 N 0.000
RC3H1 Tarsius syrichta ENSTSYG00000003913 N 0.000
RC3H1 Tursiops truncatus ENSTTRG00000008572 N 0.000
RC3H1 Vicugna pacos ENSVPAG00000002591 N 0.000
RC3H2 Vicugna pacos ENSVPAG00000005994 N 0.000
rc3h1 Xenopus tropicalis ENSXETG00000020030 N 0.000
e_gw.220.23.1 Nematostella vectensis e_gw.220.23.1 N 0.000
fgenesh2_pg.scaffold_20000167 Branchiostoma floridae fgenesh2_pg.scaffold_20000167 N 0.000
gw1.3.272.1 Daphnia pulex gw1.3.272.1 N 0.000
gw1.780.2.1 Capitella teleta gw1.780.2.1 N 0.000
ISCW013176 Ixodes scapularis ISCW013176 N 0.000
nasonia_NCBI_hmm328144 Nasonia vitripennis nasonia_NCBI_hmm328144 N 0.000
PHUM537030 Pediculus humanus PHUM537030 N 0.000
Q6NUC6 Xenopus laevis Q6NUC6 N 0.000
XP_001176931.1 Strongylocentrotus purpuratus XP_001176931.1 N 0.000
XP_001178544.1 Strongylocentrotus purpuratus XP_001178544.1 N 0.000