Pcbp3 (Rattus norvegicus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSRNOG00000001245 T19422_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		1.000
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.883
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.883
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.862
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.862
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000001675 KH 15 75
ENSRNOP00000001675 KH 99 162
ENSRNOP00000001675 KH 243 305
ENSRNOP00000040960 KH 47 107
ENSRNOP00000040960 KH 131 194
ENSRNOP00000040960 KH 295 357
ENSRNOP00000049917 KH 15 75
ENSRNOP00000049917 KH 99 162

Links

Other KH family RBPs
Other Rattus norvegicus RBPs

157 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
pcbp2 Danio rerio ENSDARG00000013184 D 0.883
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.862
PCBP1 Homo sapiens ENSG00000169564 D 0.862
Pcbp3 Mus musculus ENSMUSG00000001120 D 1.000
PCBP2 Homo sapiens ENSG00000197111 D 0.883
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.883
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.883
PCBP3 Procavia capensis ENSPCAG00000001454 I 0.771
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.851
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.856
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.862
PCBP2 Tupaia belangeri ENSTBEG00000015592 I 0.702
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.883
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.742
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.883
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.862
PCBP3 Pan troglodytes ENSPTRG00000014010 I 1.000
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.742
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.819
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.867
PCBP4 Oryzias latipes ENSORLG00000003061 I 0.730
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.742
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.883
PCBP4 Monodelphis domestica ENSMODG00000011790 I 0.711
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.809
ENSMODG00000020653 Monodelphis domestica ENSMODG00000020653 I 0.704
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.742
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.883
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.758
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 1.000
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.862
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.883
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.742
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.899
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.948
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.883
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.931
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.883
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.979
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.888
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.835
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 1.000
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.883
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.878
ISCW016289 Ixodes scapularis ISCW016289 I 0.704
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.783
fgenesh1_pm.C_scaffold_76000004 Capitella teleta fgenesh1_pm.C_scaffold_76000004 I 0.735
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.783
PASA_GEN_0700132 Daphnia pulex PASA_GEN_0700132 I 0.734
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.862
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.910
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.782
AAH41241 Xenopus laevis AAH41241 I 0.878
AAH84195 Xenopus laevis AAH84195 I 0.878
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.851
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.862
D4A8D6_RAT Rattus norvegicus ENSRNOG00000006713 I 0.703
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.742
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.862
ENSRNOG00000019487 Rattus norvegicus ENSRNOG00000019487 I 0.772
D4ADH2_RAT Rattus norvegicus ENSRNOG00000039295 I 0.778
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.883
CAD29864 Xenopus laevis CAD29864 I 0.878
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.758
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.963
PCBP1 Taeniopygia guttata ENSTGUG00000016232 I 0.707
PCBP3 Tetraodon nigroviridis ENSTNIG00000008872 I 0.789
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.979
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.856
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.772
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.979
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.824
CAB50743 Xenopus laevis CAB50743 I 0.878
amel4_ncbi_hmm16330 Apis mellifera amel4_ncbi_hmm16330 I 0.703
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.824
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.872
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.878
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.883
PCBP3 Cavia porcellus ENSCPOG00000003648 I 1.000
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.862
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.747
pcbp3 Danio rerio ENSDARG00000054378 I 0.984
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.856
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.883
LOC100050579 Equus caballus ENSECAG00000002544 I 0.862
LOC100050101 Equus caballus ENSECAG00000012413 I 1.000
PCBP2 Equus caballus ENSECAG00000022389 I 0.883
LOC100060660 Equus caballus ENSECAG00000024218 I 0.742
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.742
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.835
DGIL_AUG5s5532g9t1 Acyrtosiphon pisum DGIL_AUG5s5532g9t1 I 0.705
nasonia_NCBI_hmm938274 Nasonia vitripennis nasonia_NCBI_hmm938274 I 0.729
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.883
PCBP3 Anolis carolinensis ENSACAG00000004607 I 1.000
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.957
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.774
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.862
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.742
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.883
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.989
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.883
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.742
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.835
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 1.000
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.799
PCBP3 Echinops telfairi ENSETEG00000015988 I 0.767
PCBP3 Felis catus ENSFCAG00000014812 I 0.862
PCBP2 Myotis lucifugus ENSMLUG00000009971 I 0.745
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.952
PCBP3 Gallus gallus ENSGALG00000013155 I 0.963
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.798
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 1.000
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.742
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.883
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.862
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.883
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.910
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.862
ENSLAFG00000025534 Loxodonta africana ENSLAFG00000025534 I 0.709
PCBP3 Gallus gallus ENSGALG00000004394 I 0.957
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.973
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 1.000
PCBP4 Homo sapiens ENSG00000090097 I 0.808
PCBP3 Homo sapiens ENSG00000183570 I 1.000
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.968
PCBP3 Macaca mulatta ENSMMUG00000003825 I 1.000
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.862
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.772
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.795
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.915
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.862
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.862
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.883
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.904
CRE26806 Caenorhabditis remanei CRE26806 N 0.736
CBN14493 Caenorhabditis brenneri CBN14493 N 0.736
CBG15694 Caenorhabditis briggsae CBG15694 N 0.736
AAH74333 Xenopus laevis AAH74333 N 1.000
AAI33216 Xenopus laevis AAI33216 N 0.992
PCBP3 Spermophilus tridecemlineatus ENSSTOG00000007178 N 0.848
pes-4 Caenorhabditis elegans Y119D3B.17 N 0.720
PHUM522820 Pediculus humanus PHUM522820 N 0.808
ENSMGAG00000003191 Meleagris gallopavo ENSMGAG00000003191 N 0.840
ENSPPYG00000011525 Pongo pygmaeus ENSPPYG00000011525 N 0.928
PCBP3 Sorex araneus ENSSARG00000007629 N 0.735
PCBP4 Danio rerio ENSDARG00000024276 N 0.848
Pcbp3 Dipodomys ordii ENSDORG00000003640 N 1.000
PCBP3 Ornithorhynchus anatinus ENSOANG00000006265 N 1.000
ENSTNIG00000003546 Tetraodon nigroviridis ENSTNIG00000003546 N 0.824
LOC426023 Gallus gallus ENSGALG00000013313 N 0.904
zgc:110045 Danio rerio ENSDARG00000057141 N 0.896
PCBP3 Canis familiaris ENSCAFG00000011907 N 1.000
PCBP3 Tarsius syrichta ENSTSYG00000005254 N 0.864
PCBP2 Vicugna pacos ENSVPAG00000000406 N 0.904
pcbp1 Xenopus tropicalis ENSXETG00000011483 N 0.880
PCBP2 Erinaceus europaeus ENSEEUG00000001077 N 0.904