e_gw1.115.135.1 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.115.135.1 T49706_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.746
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.746
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.746
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.728
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.115.135.1 RRM 13 83
e_gw1.115.135.1 RRM 101 169
e_gw1.115.135.1 RRM 193 262
e_gw1.115.135.1 RRM 296 364

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

117 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC4 Homo sapiens ENSG00000090621 D 0.728
PABPC1 Homo sapiens ENSG00000070756 D 0.742
pAbp Drosophila melanogaster FBgn0261619 D 0.702
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.735
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.731
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.735
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.707
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.739
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.728
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.742
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.739
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.716
GF12652 Drosophila ananassae FBgn0089688 I 0.706
GG21846 Drosophila erecta FBgn0114024 I 0.706
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.716
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.735
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.742
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.721
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.742
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.728
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.739
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.710
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.742
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.742
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.717
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.724
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.707
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.728
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.742
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.735
GH21052 Drosophila grimshawi FBgn0128514 I 0.730
GI18654 Drosophila mojavensis FBgn0141393 I 0.730
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.733
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.765
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.728
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.733
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.733
AAA60936 Xenopus laevis AAA60936 I 0.724
AAH52100 Xenopus laevis AAH52100 I 0.728
AAH72110 Xenopus laevis AAH72110 I 0.728
AAH73435 Xenopus laevis AAH73435 I 0.739
AAI08463 Xenopus laevis AAI08463 I 0.728
CAA40721 Xenopus laevis CAA40721 I 0.728
P20965 Xenopus laevis P20965 I 0.728
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.715
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.975
GL11548 Drosophila persimilis FBgn0149157 I 0.716
GM21847 Drosophila sechellia FBgn0176724 I 0.702
GD11341 Drosophila simulans FBgn0183090 I 0.706
GJ21671 Drosophila virilis FBgn0208790 I 0.723
GK19652 Drosophila willistoni FBgn0221650 I 0.723
GE11925 Drosophila yakuba FBgn0229707 I 0.709
ISCW014211 Ixodes scapularis ISCW014211 I 0.772
PHUM617090 Pediculus humanus PHUM617090 I 0.733
185682 Helobdella robusta 185682 I 0.700
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.744
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.733
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.743
Q6IP09 Xenopus laevis Q6IP09 I 0.728
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.728
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.747
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.718
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.728
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.742
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.724
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.728
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.704
pabpc1a Danio rerio ENSDARG00000017219 I 0.746
pabpc1b Danio rerio ENSDARG00000021140 I 0.750
pabpc4 Danio rerio ENSDARG00000059259 I 0.735
LOC100054235 Equus caballus ENSECAG00000009396 I 0.728
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.731
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.744
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.728
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.742
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.747
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.747
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.730
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.737
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.737
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.737
AAEL010318 Aedes aegypti AAEL010318 I 0.744
AGAP011092 Anopheles gambiae AGAP011092 I 0.730
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.744
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.703
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.742
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.728
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.707
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.735
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.721
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.742
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.714
Gm10110 Mus musculus ENSMUSG00000062093 I 0.724
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.742
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.731
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.728
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.742
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.742
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.742
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.731
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.739
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.714
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.721
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.722
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.735
PABPC4 Gallus gallus ENSGALG00000003800 I 0.735
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.728
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.728
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.742
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.728
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.707
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.728
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.742
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.717
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.739
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.717
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.742