CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
PABPC1L
(
Microcebus murinus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMICG00000000974
T38461_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.773
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.770
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.770
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.770
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.716
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMICP00000000883
RRM
13
83
LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIR
ENSMICP00000000883
RRM
101
169
IFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETQEAAQNAISTMNGMLLNDRKVF
ENSMICP00000000883
RRM
192
261
IYVKNLKADVDEHGLQELFSQFGKTLSVKVMRDNGGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGQLLY
ENSMICP00000000883
RRM
295
363
LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSRWFGFVCFSSPEEATKAVTEMNGRIVGTKPLY
Links
Other
RRM
family RBPs
Other
Microcebus murinus
RBPs
125 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R005385
Ailuropoda melanoleuca
Ame_R005385
I
0.000
ENSBTAG00000026909
Bos taurus
ENSBTAG00000026909
I
0.000
LOC100395223
Callithrix jacchus
ENSCJAG00000013538
I
0.000
NCL
Vicugna pacos
ENSVPAG00000001796
I
0.000
NCL
Tursiops truncatus
ENSTTRG00000009094
I
0.000
NCL
Tarsius syrichta
ENSTSYG00000004355
I
0.000
NCL
Pteropus vampyrus
ENSPVAG00000000297
I
0.000
NCL
Pan troglodytes
ENSPTRG00000013025
I
0.000
NCL
Oryctolagus cuniculus
ENSOCUG00000004312
I
0.000
NCL
Macaca mulatta
ENSMMUG00000018094
I
0.000
NCL
Microcebus murinus
ENSMICG00000002538
I
0.000
NCL
Gorilla gorilla
ENSGGOG00000004300
I
0.000
NCL
Homo sapiens
ENSG00000115053
D
0.000
NCL
Erinaceus europaeus
ENSEEUG00000005913
I
0.000
NCL
Canis familiaris
ENSCAFG00000011037
I
0.000
NCL
Bos taurus
ENSBTAG00000016174
I
0.000
Q6X9Z0_HORSE
Equus caballus
ENSECAG00000021868
I
0.000