LOC_Os04g57010 (Oryza sativa)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		LOC_Os04g57010 T00171_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os04g57010.1 CCCH ZF 38 62
LOC_Os04g57010.1 CCCH ZF 104 130
LOC_Os04g57010.1 KH 177 239
LOC_Os04g57010.1 CCCH ZF 276 301
LOC_Os04g57010.2 CCCH ZF 15 41
LOC_Os04g57010.2 KH 88 150
LOC_Os04g57010.2 CCCH ZF 187 212

Links

Other CCCH ZF,KH family RBPs
Other Oryza sativa RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.929
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.810
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.832
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.819
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.823
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.773
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.837
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.844
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.844
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.823
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.844
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.823
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.844
MDP0000202971 Malus x domestica MDP0000202971 N 0.752
MDP0000263392 Malus x domestica MDP0000263392 N 0.810
MDP0000217837 Malus x domestica MDP0000217837 N 0.801
MDP0000275117 Malus x domestica MDP0000275117 N 0.752
MDP0000176924 Malus x domestica MDP0000176924 N 0.752
MDP0000130160 Malus x domestica MDP0000130160 N 0.752
MDP0000120315 Malus x domestica MDP0000120315 N 0.752
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.745
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.809
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.831
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.716
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.810
mgf001428m Mimulus guttatus mgf001428m N 0.732
mgf003025m Mimulus guttatus mgf003025m N 0.801
mgf010445m Mimulus guttatus mgf010445m N 0.780
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.866
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.754
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.922
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.831
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.871
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.836
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.732
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.767
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.776
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.775
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.775
ppa009199m Prunus persica ppa009199m N 0.851
ppa009316m Prunus persica ppa009316m N 0.837
27843.m000161 Ricinus communis 27843.m000161 N 0.809
27843.m000162 Ricinus communis 27843.m000162 N 0.801
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.828
SB06G032000 Sorghum bicolor Sb06g032000 N 0.922
SB04G006450 Sorghum bicolor Sb04g006450 N 0.823
GSVIVG00001369001 Vitis vinifera GSVIVG00001369001 N 0.724
GSVIVG00033508001 Vitis vinifera GSVIVG00033508001 N 0.716
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.724
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.748
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.908
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.828
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.810
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.897