ROD1 (Bos taurus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSBTAG00000016750 T34886_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.790
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.790
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.790
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000022272 RRM 33 83
ENSBTAP00000022272 RRM 153 219
ENSBTAP00000022272 RRM 331 398
ENSBTAP00000022272 RRM 449 513
ENSBTAP00000022273 RRM 25 75
ENSBTAP00000022273 RRM 145 211
ENSBTAP00000022273 RRM 297 363
ENSBTAP00000022273 RRM 414 478

Links

Other RRM family RBPs
Other Bos taurus RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ROD1 Equus caballus ENSECAG00000021243 I 0.980
ROD1 Sus scrofa ENSSSCG00000005466 I 0.980
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.969
ROD1 Homo sapiens ENSG00000119314 I 0.969
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.969
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.969
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.969
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.965
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.965
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.961
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.953
Rod1 Mus musculus ENSMUSG00000028382 I 0.953
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.949
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.937
ROD1 Canis familiaris ENSCAFG00000003015 I 0.925
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.913
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.866
ROD1 Tursiops truncatus ENSTTRG00000009283 N 0.862
ROD1 Sorex araneus ENSSARG00000002649 N 0.843
ROD1 Choloepus hoffmanni ENSCHOG00000002039 N 0.843
ROD1 Danio rerio ENSDARG00000043757 I 0.831
ROD1 Procavia capensis ENSPCAG00000002288 N 0.827
ROD1 Tarsius syrichta ENSTSYG00000010375 N 0.827
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.804
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.804
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.801
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.801
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.797
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.797
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.793
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.793
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.793
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.793
PTBP1 Homo sapiens ENSG00000011304 D 0.793
AAF00041 Xenopus laevis AAF00041 I 0.793
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.793
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.792
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.792
AAH45068 Xenopus laevis AAH45068 I 0.790
ROD1 Vicugna pacos ENSVPAG00000006136 N 0.787
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.785
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.785
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.784
PTBP1 Equus caballus ENSECAG00000018845 I 0.777
ptbp1a Danio rerio ENSDARG00000019362 I 0.774
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.774
ptbp1b Danio rerio ENSDARG00000031907 I 0.770
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.763
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.762
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.753
ROD1 Taeniopygia guttata ENSTGUG00000001262 N 0.752
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.749
ROD1 Pteropus vampyrus ENSPVAG00000002177 N 0.748
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.746
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.746
AAH97557 Xenopus laevis AAH97557 I 0.742
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.738
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.737
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.732
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.728
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.728
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.728
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.728
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.728
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.728
PTBP2 Homo sapiens ENSG00000117569 I 0.728
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.728
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.728
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.728
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.728
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.728
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.728
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.728
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.728
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.728
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.727
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.727
LOC100057336 Equus caballus ENSECAG00000015783 I 0.725
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.724
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.724
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.724
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.723
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.718
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.716