Sb01g046550 (Sorghum bicolor)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Sb01g046550 T62258_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb01g046550.1 YTH 503 593
Sb01g046550.2 YTH 502 592
Sb01g046550.3 YTH 501 591

Links

Other YTH family RBPs
Other Sorghum bicolor RBPs

179 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.989
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.978
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.934
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.923
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.923
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.857
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.846
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.846
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.846
SB01G008170 Sorghum bicolor Sb01g008170 N 0.846
mgf009938m Mimulus guttatus mgf009938m N 0.835
mgf013853m Mimulus guttatus mgf013853m N 0.835
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.835
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.835
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.824
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.824
PK23716.1 Cannabis sativa PK23716.1 N 0.813
SB01G005500 Sorghum bicolor Sb01g005500 N 0.813
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.813
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.802
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.802
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.802
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.802
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.802
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.802
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.802
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.802
MDP0000718677 Malus x domestica MDP0000718677 N 0.802
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.802
mgf013935m Mimulus guttatus mgf013935m N 0.802
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.802
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.802
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.802
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.802
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.802
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.802
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.802
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.802
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.802
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.802
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.802
SB02G003990 Sorghum bicolor Sb02g003990 N 0.802
MDP0000129009 Malus x domestica MDP0000129009 N 0.791
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.791
MDP0000488588 Malus x domestica MDP0000488588 N 0.791
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.791
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.791
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.791
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.791
MDP0000124048 Malus x domestica MDP0000124048 N 0.791
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.791
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.791
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.791
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.791
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.780
SB07G006330 Sorghum bicolor Sb07g006330 N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
SB07G024500 Sorghum bicolor Sb07g024500 N 0.780
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.780
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.780
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.780
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.769
29950.m001140 Ricinus communis 29950.m001140 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.769
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.769
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.769
SB06G027960 Sorghum bicolor Sb06g027960 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.769
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.769
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.769
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.769
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.758
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.758
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.758
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.758
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.758
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.758
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.747
ppa018635m Prunus persica ppa018635m N 0.747
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.747
ppa003664m Prunus persica ppa003664m N 0.747
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.747
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.747
29889.m003364 Ricinus communis 29889.m003364 N 0.747
SB09G000580 Sorghum bicolor Sb09g000580 N 0.747
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.747
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.736
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.736
mgf017987m Mimulus guttatus mgf017987m N 0.736
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.736
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.736
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.736
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.736
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.736
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.736
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.736
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.736
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.736
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.736
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.736
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.736
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.736
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.736
MDP0000171737 Malus x domestica MDP0000171737 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.736
MDP0000286471 Malus x domestica MDP0000286471 N 0.736
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.736
mgf001716m Mimulus guttatus mgf001716m N 0.725
29955.m001158 Ricinus communis 29955.m001158 N 0.725
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.725
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.725
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.725
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.725
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.725
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.725
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.725
MDP0000132385 Malus x domestica MDP0000132385 N 0.725
mgf014143m Mimulus guttatus mgf014143m N 0.725
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.725
MDP0000617859 Malus x domestica MDP0000617859 N 0.725
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.725
PK02315.1 Cannabis sativa PK02315.1 N 0.725
mgf019846m Mimulus guttatus mgf019846m N 0.725
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.725
SB03G031190 Sorghum bicolor Sb03g031190 N 0.725
MDP0000405927 Malus x domestica MDP0000405927 N 0.725
MDP0000306387 Malus x domestica MDP0000306387 N 0.725
MDP0000287088 Malus x domestica MDP0000287088 N 0.725
mgf014829m Mimulus guttatus mgf014829m N 0.725
mgf015583m Mimulus guttatus mgf015583m N 0.725
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.725
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.714
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.714
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.714
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.714
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
PK26094.1 Cannabis sativa PK26094.1 N 0.714
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
ppa002483m Prunus persica ppa002483m N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.714
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.714
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.714
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.714
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.703
29765.m000746 Ricinus communis 29765.m000746 N 0.703
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.703
PK17832.1 Cannabis sativa PK17832.1 N 0.703
PK23104.1 Cannabis sativa PK23104.1 N 0.703
PK05579.1 Cannabis sativa PK05579.1 N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.703
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.703
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.703
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.703
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.703
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.703
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.703
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.703