CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BGIOSIBCE009738
(
Oryza indica
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
BGIOSIBCE009738
T61940_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIOSIBCE009738
YTH
514
604
LFFSVNTSGQFVGVAEMTGAVDFEKTLEYWQQDKWNGSLSLKWHIVKDVPNNILKHIILENNENKPVTNSRDTQEVNLDQGIQMLKIFKEH
Links
Other
YTH
family RBPs
Other
Oryza indica
RBPs
140 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os03g06240
Oryza sativa
LOC_Os03g06240
N
1.000
GRMZM2G076062
Zea mays
GRMZM2G076062
N
0.923
BRADI1G74560
Brachypodium distachyon
BRADI1G74560
N
0.923
Sb01g046550
Sorghum bicolor
Sb01g046550
N
0.923
GRMZM2G330019
Zea mays
GRMZM2G330019
N
0.923
SB01G008170
Sorghum bicolor
Sb01g008170
N
0.846
GRMZM2G126338
Zea mays
GRMZM2G126338
N
0.835
GSVIVG00025494001
Vitis vinifera
GSVIVG00025494001
N
0.824
BRADI4G02150
Brachypodium distachyon
BRADI4G02150
N
0.824
mgf009938m
Mimulus guttatus
mgf009938m
N
0.813
LOC_Os03g53670
Oryza sativa
LOC_Os03g53670
N
0.813
mgf013853m
Mimulus guttatus
mgf013853m
N
0.813
Cucsa.142200
Cucumis sativus
Cucsa.142200
N
0.802
BRADI1G05970
Brachypodium distachyon
BRADI1G05970
N
0.802
cassava12389.valid.m1
Manihot esculenta
cassava12389.valid.m1
N
0.791
ECT2
Arabidopsis thaliana
AT3G13460-TAIR-G
N
0.791
cassava12386.valid.m1
Manihot esculenta
cassava12386.valid.m1
N
0.791
SB01G005500
Sorghum bicolor
Sb01g005500
N
0.791
PK23716.1
Cannabis sativa
PK23716.1
N
0.791
PDK_20s1308332g001
Phoenix dactylifera
PDK_20s1308332g001
N
0.791
cassava12388.valid.m1
Manihot esculenta
cassava12388.valid.m1
N
0.791
XM_002884922.1
Arabidopsis lyrata
fgenesh2_kg.3__1434__AT3G13460.1
N
0.791
cassava12387.valid.m1
Manihot esculenta
cassava12387.valid.m1
N
0.791
cassava20494.m1
Manihot esculenta
cassava20494.m1
N
0.780
cassava35657.valid.m1
Manihot esculenta
cassava35657.valid.m1
N
0.780
cassava20495.m1
Manihot esculenta
cassava20495.m1
N
0.780
cassava18205.valid.m1
Manihot esculenta
cassava18205.valid.m1
N
0.780
cassava18203.valid.m1
Manihot esculenta
cassava18203.valid.m1
N
0.780
cassava18204.valid.m1
Manihot esculenta
cassava18204.valid.m1
N
0.780
cassava35658.valid.m1
Manihot esculenta
cassava35658.valid.m1
N
0.780
cassava35667.valid.m1
Manihot esculenta
cassava35667.valid.m1
N
0.780
mgf013935m
Mimulus guttatus
mgf013935m
N
0.780
cassava38867.m1
Manihot esculenta
cassava38867.m1
N
0.780
GRMZM2G144726
Zea mays
GRMZM2G144726
N
0.780
Medtr4g136900
Medicago truncatula
Medtr4g136900
N
0.780
MDP0000718677
Malus x domestica
MDP0000718677
N
0.780
cassava38866.m1
Manihot esculenta
cassava38866.m1
N
0.780
cassava35666.valid.m1
Manihot esculenta
cassava35666.valid.m1
N
0.780
cassava35661.valid.m1
Manihot esculenta
cassava35661.valid.m1
N
0.780
cassava35662.valid.m1
Manihot esculenta
cassava35662.valid.m1
N
0.780
cassava35663.valid.m1
Manihot esculenta
cassava35663.valid.m1
N
0.780
cassava35665.valid.m1
Manihot esculenta
cassava35665.valid.m1
N
0.780
cassava35660.valid.m1
Manihot esculenta
cassava35660.valid.m1
N
0.780
cassava35659.valid.m1
Manihot esculenta
cassava35659.valid.m1
N
0.780
XM_002891791.1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1004195
N
0.780
cassava30727.valid.m1
Manihot esculenta
cassava30727.valid.m1
N
0.769
B9GXX7_POPTR
Populus trichocarpa
POPTR_0003s20840
N
0.769
Glyma05g30020.1
Glycine max
Glyma05g30020.1
N
0.769
cassava30728.valid.m1
Manihot esculenta
cassava30728.valid.m1
N
0.769
MDP0000129009
Malus x domestica
MDP0000129009
N
0.769
cassava30729.valid.m1
Manihot esculenta
cassava30729.valid.m1
N
0.769
BGIOSIBCE023845
Oryza indica
BGIOSIBCE023845
N
0.758
LOC_Os07g07490
Oryza sativa
LOC_Os07g07490
N
0.758
Glyma08g13130.1
Glycine max
Glyma08g13130.1
N
0.758
ECT4
Arabidopsis thaliana
AT1G55500-TAIR-G
N
0.758
LOC_Os04g51940
Oryza sativa
LOC_Os04g51940
N
0.758
29950.m001140
Ricinus communis
29950.m001140
N
0.758
A9PED2_POPTR
Populus trichocarpa
POPTR_0019s04990
N
0.758
SB02G003990
Sorghum bicolor
Sb02g003990
N
0.758
LOC_Os08g44200
Oryza sativa
LOC_Os08g44200
N
0.747
SB07G024500
Sorghum bicolor
Sb07g024500
N
0.747
MDP0000124048
Malus x domestica
MDP0000124048
N
0.747
SB07G006330
Sorghum bicolor
Sb07g006330
N
0.747
MDP0000488588
Malus x domestica
MDP0000488588
N
0.747
MDP0000286471
Malus x domestica
MDP0000286471
N
0.747
LOC_Os08g12760
Oryza sativa
LOC_Os08g12760
N
0.747
ECT3
Arabidopsis thaliana
AT5G61020-TAIR-G
N
0.747
GRMZM2G025488
Zea mays
GRMZM2G025488
N
0.747
MDP0000231231
Malus x domestica
MDP0000231231
N
0.747
ppa003664m
Prunus persica
ppa003664m
N
0.747
BGIOSIBCE026930
Oryza indica
BGIOSIBCE026930
N
0.747
cassava22612.valid.m1
Manihot esculenta
cassava22612.valid.m1
N
0.747
BGIOSIBCE028829
Oryza indica
BGIOSIBCE028829
N
0.747
GSVIVG00033395001
Vitis vinifera
GSVIVG00033395001
N
0.747
Medtr7g100450
Medicago truncatula
Medtr7g100450
N
0.736
BRADI3G42640
Brachypodium distachyon
BRADI3G42640
N
0.736
MDP0000171737
Malus x domestica
MDP0000171737
N
0.736
XM_002866364.1
Arabidopsis lyrata
fgenesh2_kg.8__2071__AT5G61020.1
N
0.736
SB06G027960
Sorghum bicolor
Sb06g027960
N
0.736
GRMZM2G442195
Zea mays
GRMZM2G442195
N
0.736
cassava42992.valid.m1
Manihot esculenta
cassava42992.valid.m1
N
0.725
chr6.LjT36O06.80.nd
Lotus japonicus
chr6.LjT36O06.80.nd
N
0.725
ECT5
Arabidopsis thaliana
AT3G13060-TAIR-G
N
0.725
XM_002882758.1
Arabidopsis lyrata
fgenesh2_kg.3__1376__AT3G13060.2
N
0.725
cassava17771.valid.m1
Manihot esculenta
cassava17771.valid.m1
N
0.725
XM_002887730.1
Arabidopsis lyrata
fgenesh2_kg.2__2224__AT1G79270.1
N
0.725
ECT8
Arabidopsis thaliana
AT1G79270-TAIR-G
N
0.725
Glyma08g17240.1
Glycine max
Glyma08g17240.1
N
0.725
BRADI3G18190
Brachypodium distachyon
BRADI3G18190
N
0.725
GSVIVG00017649001
Vitis vinifera
GSVIVG00017649001
N
0.725
Cucsa.135220
Cucumis sativus
Cucsa.135220
N
0.725
GRMZM2G127780
Zea mays
GRMZM2G127780
N
0.725
29955.m001158
Ricinus communis
29955.m001158
N
0.725
cassava42993.valid.m1
Manihot esculenta
cassava42993.valid.m1
N
0.725
cassava17772.valid.m1
Manihot esculenta
cassava17772.valid.m1
N
0.725
Medtr6g030790
Medicago truncatula
Medtr6g030790
N
0.714
MDP0000617859
Malus x domestica
MDP0000617859
N
0.714
MDP0000287088
Malus x domestica
MDP0000287088
N
0.714
MDP0000405927
Malus x domestica
MDP0000405927
N
0.714
BGIOSIBCE016517
Oryza indica
BGIOSIBCE016517
N
0.714
ECT1
Arabidopsis thaliana
AT3G03950-TAIR-G
N
0.714
Medtr6g030800
Medicago truncatula
Medtr6g030800
N
0.714
Glyma17g04270.1
Glycine max
Glyma17g04270.1
N
0.714
Glyma16g04590.1
Glycine max
Glyma16g04590.1
N
0.714
B9HYD4_POPTR
Populus trichocarpa
POPTR_0010s18300
N
0.714
B9HI18_POPTR
Populus trichocarpa
POPTR_0008s08030
N
0.714
GSVIVG00036696001
Vitis vinifera
GSVIVG00036696001
N
0.714
GSVIVG00032236001
Vitis vinifera
GSVIVG00032236001
N
0.714
Glyma19g28710.1
Glycine max
Glyma19g28710.1
N
0.714
GRMZM2G169116
Zea mays
GRMZM2G169116
N
0.714
SB03G031190
Sorghum bicolor
Sb03g031190
N
0.714
B9HBC4_POPTR
Populus trichocarpa
POPTR_0006s07970
N
0.714
BGIOSIBCE012954
Oryza indica
BGIOSIBCE012954
N
0.714
SB09G000580
Sorghum bicolor
Sb09g000580
N
0.714
cassava1918.valid.m1
Manihot esculenta
cassava1918.valid.m1
N
0.703
ppa002588m
Prunus persica
ppa002588m
N
0.703
ppa002483m
Prunus persica
ppa002483m
N
0.703
cassava1916.valid.m1
Manihot esculenta
cassava1916.valid.m1
N
0.703
29889.m003364
Ricinus communis
29889.m003364
N
0.703
BGIOSIBCE003171
Oryza indica
BGIOSIBCE003171
N
0.703
B9HG69_POPTR
Populus trichocarpa
POPTR_0007s15150
N
0.703
cassava1917.valid.m1
Manihot esculenta
cassava1917.valid.m1
N
0.703
PK02315.1
Cannabis sativa
PK02315.1
N
0.703
PK23104.1
Cannabis sativa
PK23104.1
N
0.703
ppa018635m
Prunus persica
ppa018635m
N
0.703
LOC_Os01g48790
Oryza sativa
LOC_Os01g48790
N
0.703
Glyma15g41960.1
Glycine max
Glyma15g41960.1
N
0.703
Glyma09g03590.1
Glycine max
Glyma09g03590.1
N
0.703
mgf019846m
Mimulus guttatus
mgf019846m
N
0.703
BRADI5G01317
Brachypodium distachyon
BRADI5G01317
N
0.703
Medtr2g036990
Medicago truncatula
Medtr2g036990
N
0.703
BRADI1G64100
Brachypodium distachyon
BRADI1G64100
N
0.703
MDP0000132385
Malus x domestica
MDP0000132385
N
0.703
Glyma02g07920.1
Glycine max
Glyma02g07920.1
N
0.703
MDP0000306387
Malus x domestica
MDP0000306387
N
0.703
BRADI2G46590
Brachypodium distachyon
BRADI2G46590
N
0.703
XM_002882275.1
Arabidopsis lyrata
fgenesh2_kg.3__349__AT3G03950.3
N
0.703
MDP0000248088
Malus x domestica
MDP0000248088
N
0.703
Cucsa.356240
Cucumis sativus
Cucsa.356240
N
0.703
MDP0000552419
Malus x domestica
MDP0000552419
N
0.703