BRADI1G74560 (Brachypodium distachyon)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 BRADI1G74560 T61952_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI1G74560.1 YTH 530 620

Links

Other YTH family RBPs
Other Brachypodium distachyon RBPs

160 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.934
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.934
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.934
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.923
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.923
SB01G008170 Sorghum bicolor Sb01g008170 N 0.835
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.824
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.824
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.824
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.813
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.813
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.813
mgf009938m Mimulus guttatus mgf009938m N 0.802
mgf013853m Mimulus guttatus mgf013853m N 0.802
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.802
PK23716.1 Cannabis sativa PK23716.1 N 0.802
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.791
MDP0000718677 Malus x domestica MDP0000718677 N 0.791
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.780
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.780
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.780
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.780
MDP0000129009 Malus x domestica MDP0000129009 N 0.780
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.780
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.780
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.780
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.769
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.769
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.769
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.769
29950.m001140 Ricinus communis 29950.m001140 N 0.769
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.769
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.769
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.769
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.769
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.769
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.769
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.769
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.769
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.769
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.769
SB01G005500 Sorghum bicolor Sb01g005500 N 0.769
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.769
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.769
mgf013935m Mimulus guttatus mgf013935m N 0.769
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.769
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.769
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.769
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.758
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.758
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.758
SB07G006330 Sorghum bicolor Sb07g006330 N 0.758
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.758
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.758
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.758
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.758
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
SB02G003990 Sorghum bicolor Sb02g003990 N 0.758
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.758
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.758
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
SB07G024500 Sorghum bicolor Sb07g024500 N 0.758
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.747
MDP0000124048 Malus x domestica MDP0000124048 N 0.747
MDP0000488588 Malus x domestica MDP0000488588 N 0.747
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.747
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.747
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.747
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.747
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.747
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.747
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.747
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.747
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.747
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.747
SB06G027960 Sorghum bicolor Sb06g027960 N 0.747
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.747
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.736
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.736
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.736
MDP0000286471 Malus x domestica MDP0000286471 N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
ppa003664m Prunus persica ppa003664m N 0.736
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.736
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.736
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.725
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.725
MDP0000405927 Malus x domestica MDP0000405927 N 0.725
MDP0000617859 Malus x domestica MDP0000617859 N 0.725
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.725
MDP0000287088 Malus x domestica MDP0000287088 N 0.725
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.725
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.725
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.725
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.725
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.725
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.725
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.725
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.725
PK02315.1 Cannabis sativa PK02315.1 N 0.725
ppa018635m Prunus persica ppa018635m N 0.725
SB09G000580 Sorghum bicolor Sb09g000580 N 0.725
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.714
ppa002483m Prunus persica ppa002483m N 0.714
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.714
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.714
mgf017987m Mimulus guttatus mgf017987m N 0.714
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.714
29955.m001158 Ricinus communis 29955.m001158 N 0.714
29889.m003364 Ricinus communis 29889.m003364 N 0.714
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.714
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.714
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.714
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.714
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.714
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.714
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.714
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.714
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.714
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.703
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.703
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.703
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.703
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.703
mgf014143m Mimulus guttatus mgf014143m N 0.703
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.703
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.703
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.703
MDP0000306387 Malus x domestica MDP0000306387 N 0.703
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.703
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.703
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.703
MDP0000132385 Malus x domestica MDP0000132385 N 0.703
PK23104.1 Cannabis sativa PK23104.1 N 0.703
mgf015583m Mimulus guttatus mgf015583m N 0.703
PK17832.1 Cannabis sativa PK17832.1 N 0.703
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.703