CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cassava19141.valid.m1
(
Manihot esculenta
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
cassava19141.valid.m1
T04753_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava19141.valid.m1
CCCH ZF
48
74
PDEADCIYYLRTGFCGYGARCRFNHPR
cassava19141.valid.m1
CCCH ZF
95
120
GQPVCQYYMRTGTCKFGASCKYHHPR
cassava19141.valid.m1
CCCH ZF
140
166
QGERECTYYVKTGQCKFGATCKFHHPQ
cassava19141.valid.m1
CCCH ZF
306
332
PGQPECQYYMKTGDCKFGSSCRYHHPP
cassava19141.valid.m1
CCCH ZF
352
378
PGAPTCTHYTQRGQCKFGPACKFDHPM
Links
Other
CCCH ZF
family RBPs
Other
Manihot esculenta
RBPs
54 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29647.m002009
Ricinus communis
29647.m002009
N
0.731
29726.m004014
Ricinus communis
29726.m004014
N
0.940
30128.m009030
Ricinus communis
30128.m009030
N
0.731
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.726
AT3G06410
Arabidopsis thaliana
AT3G06410-TAIR-G
N
0.793
AT5G18550
Arabidopsis thaliana
AT5G18550-TAIR-G
N
0.778
BRADI2G09340
Brachypodium distachyon
BRADI2G09340
N
0.711
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.763
cassava12889.valid.m1
Manihot esculenta
cassava12889.valid.m1
N
0.711
cassava12890.valid.m1
Manihot esculenta
cassava12890.valid.m1
N
0.711
cassava17662.valid.m1
Manihot esculenta
cassava17662.valid.m1
N
0.731
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.746
cassava43930.valid.m1
Manihot esculenta
cassava43930.valid.m1
N
0.941
chr1.CM1413.200.nd
Lotus japonicus
chr1.CM1413.200.nd
N
0.724
XM_002884531.1
Arabidopsis lyrata
fgenesh2_kg.3__645__AT3G06410.1
N
0.785
XM_002871776.1
Arabidopsis lyrata
fgenesh2_kg.6__1872__AT5G18550.1
N
0.778
Glyma02g17260.1
Glycine max
Glyma02g17260.1
N
0.709
Glyma07g37980.1
Glycine max
Glyma07g37980.1
N
0.896
Glyma09g38650.1
Glycine max
Glyma09g38650.1
N
0.724
Glyma10g02550.1
Glycine max
Glyma10g02550.1
N
0.716
Glyma10g31370.1
Glycine max
Glyma10g31370.1
N
0.739
Glyma17g02720.1
Glycine max
Glyma17g02720.1
N
0.881
Glyma18g47660.1
Glycine max
Glyma18g47660.1
N
0.716
Glyma20g36140.1
Glycine max
Glyma20g36140.1
N
0.716
GRMZM2G036837
Zea mays
GRMZM2G036837
N
0.726
GRMZM2G069009
Zea mays
GRMZM2G069009
N
0.711
GRMZM2G086994
Zea mays
GRMZM2G086994
N
0.741
GRMZM2G475017
Zea mays
GRMZM2G475017
N
0.704
GSVIVG00010980001
Vitis vinifera
GSVIVG00010980001
N
0.746
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.896
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.739
LOC_Os01g15350
Oryza sativa
LOC_Os01g15350
N
0.763
LOC_Os01g15460
Oryza sativa
LOC_Os01g15460
N
0.731
LOC_Os11g28270
Oryza sativa
LOC_Os11g28270
N
0.709
LOC_Os12g21700
Oryza sativa
LOC_Os12g21700
N
0.701
MDP0000207283
Malus x domestica
MDP0000207283
N
0.746
MDP0000319251
Malus x domestica
MDP0000319251
N
0.896
MDP0000535412
Malus x domestica
MDP0000535412
N
0.888
Medtr8g139290
Medicago truncatula
Medtr8g139290
N
0.888
mgf001793m
Mimulus guttatus
mgf001793m
N
0.709
mgf002685m
Mimulus guttatus
mgf002685m
N
0.813
mgf004851m
Mimulus guttatus
mgf004851m
N
0.709
mgf008934m
Mimulus guttatus
mgf008934m
N
0.807
mgf010716m
Mimulus guttatus
mgf010716m
N
0.709
mgf026218m
Mimulus guttatus
mgf026218m
N
0.754
PK23881.1
Cannabis sativa
PK23881.1
N
0.709
PK29685.1
Cannabis sativa
PK29685.1
N
0.873
ppa005056m
Prunus persica
ppa005056m
N
0.910
ppa005229m
Prunus persica
ppa005229m
N
0.746
ppa005813m
Prunus persica
ppa005813m
N
0.724
SB03G009920
Sorghum bicolor
Sb03g009920
N
0.704
SB03G009930
Sorghum bicolor
Sb03g009930
N
0.726
SB05G013190
Sorghum bicolor
Sb05g013190
N
0.701
XM_002880280.1
Arabidopsis lyrata
scaffold_403761.1
N
0.726