cassava19141.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava19141.valid.m1 T04753_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava19141.valid.m1 CCCH ZF 48 74
cassava19141.valid.m1 CCCH ZF 95 120
cassava19141.valid.m1 CCCH ZF 140 166
cassava19141.valid.m1 CCCH ZF 306 332
cassava19141.valid.m1 CCCH ZF 352 378

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29908.m006046 Ricinus communis 29908.m006046 I 0.000
29983.m003293 Ricinus communis 29983.m003293 I 0.000
30076.m004440 Ricinus communis 30076.m004440 I 0.000
30170.m013735 Ricinus communis 30170.m013735 I 0.000
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.000
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.000
AT1G33470 Arabidopsis thaliana AT1G33470-TAIR-G N 0.000
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.000
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.000
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.000
BGIOSIBCE022665 Oryza indica BGIOSIBCE022665 I 0.000
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.000
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.000
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.000
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.000
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.000
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.000
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.000
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.000
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.000
CU179634_3 Medicago truncatula CU179634_3 I 0.000
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.000
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.000
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.000
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.000
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.000
XM_002890997.1 Arabidopsis lyrata fgenesh2_kg.1__3472__AT1G33470.1 N 0.000
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.000
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.000
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.000
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.000
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.000
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.000
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.000
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.000
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.000
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.000
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.000
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.000
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.000
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.000
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.000
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.000
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.000
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.000
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.000
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.000
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.000
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.000
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.000
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.000
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.000
LOC_Os06g41790 Oryza sativa LOC_Os06g41790 I 0.000
MDP0000138486 Malus x domestica MDP0000138486 I 0.000
MDP0000181802 Malus x domestica MDP0000181802 N 0.000
MDP0000271231 Malus x domestica MDP0000271231 N 0.000
MDP0000488395 Malus x domestica MDP0000488395 I 0.000
MDP0000548950 Malus x domestica MDP0000548950 I 0.000
MDP0000744398 Malus x domestica MDP0000744398 I 0.000
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.000
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.000
mgf002440m Mimulus guttatus mgf002440m N 0.000
mgf017214m Mimulus guttatus mgf017214m I 0.000
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.000
PK14266.1 Cannabis sativa PK14266.1 I 0.000
PK21213.1 Cannabis sativa PK21213.1 I 0.000
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.000
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.000
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.000
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.000
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.000
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.000
ppa009564m Prunus persica ppa009564m I 0.000
ppa009716m Prunus persica ppa009716m I 0.000
ppa016222m Prunus persica ppa016222m I 0.000
ppa018603m Prunus persica ppa018603m I 0.000
SB03G041530 Sorghum bicolor Sb03g041530 I 0.000
SB03G046430 Sorghum bicolor Sb03g046430 N 0.000
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.000