cassava19141.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava19141.valid.m1 T04753_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava19141.valid.m1 CCCH ZF 48 74
cassava19141.valid.m1 CCCH ZF 95 120
cassava19141.valid.m1 CCCH ZF 140 166
cassava19141.valid.m1 CCCH ZF 306 332
cassava19141.valid.m1 CCCH ZF 352 378

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29647.m002009 Ricinus communis 29647.m002009 N 0.731
29726.m004014 Ricinus communis 29726.m004014 N 0.940
30128.m009030 Ricinus communis 30128.m009030 N 0.731
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.726
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.793
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.778
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.711
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.763
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.711
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.711
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.731
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.746
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.941
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.724
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.785
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.778
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.709
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.896
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.724
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.716
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.739
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.881
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.716
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.716
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.726
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.711
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.741
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.704
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.746
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.896
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.739
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.763
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.731
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.709
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.701
MDP0000207283 Malus x domestica MDP0000207283 N 0.746
MDP0000319251 Malus x domestica MDP0000319251 N 0.896
MDP0000535412 Malus x domestica MDP0000535412 N 0.888
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.888
mgf001793m Mimulus guttatus mgf001793m N 0.709
mgf002685m Mimulus guttatus mgf002685m N 0.813
mgf004851m Mimulus guttatus mgf004851m N 0.709
mgf008934m Mimulus guttatus mgf008934m N 0.807
mgf010716m Mimulus guttatus mgf010716m N 0.709
mgf026218m Mimulus guttatus mgf026218m N 0.754
PK23881.1 Cannabis sativa PK23881.1 N 0.709
PK29685.1 Cannabis sativa PK29685.1 N 0.873
ppa005056m Prunus persica ppa005056m N 0.910
ppa005229m Prunus persica ppa005229m N 0.746
ppa005813m Prunus persica ppa005813m N 0.724
SB03G009920 Sorghum bicolor Sb03g009920 N 0.704
SB03G009930 Sorghum bicolor Sb03g009930 N 0.726
SB05G013190 Sorghum bicolor Sb05g013190 N 0.701
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.726