estExt_Genewise1.C_350182 (Physcomitrella patens)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 estExt_Genewise1.C_350182 T24806_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_350182 PUF 782 816
estExt_Genewise1.C_350182 PUF 818 851
estExt_Genewise1.C_350182 PUF 854 887
estExt_Genewise1.C_350182 PUF 890 924
estExt_Genewise1.C_350182 PUF 926 958
estExt_Genewise1.C_350182 PUF 963 997
estExt_Genewise1.C_350182 PUF 999 1033
estExt_Genewise1.C_350182 PUF 1046 1075

Links

Other PUF family RBPs
Other Physcomitrella patens RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30143.m001164 Ricinus communis 30143.m001164 N 0.769
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.736
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.754
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.753
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.753
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.768
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.764
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.766
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.769
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.769
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.768
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.751
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.762
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.758
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.758
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.762
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.762
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.766
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.738
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.746
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.783
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.780
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.775
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.736
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.754
MDP0000191652 Malus x domestica MDP0000191652 N 0.745
MDP0000314338 Malus x domestica MDP0000314338 N 0.764
MDP0000319167 Malus x domestica MDP0000319167 N 0.774
MDP0000776183 Malus x domestica MDP0000776183 N 0.758
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.766
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.761
mgf015234m Mimulus guttatus mgf015234m N 0.739
mgf015734m Mimulus guttatus mgf015734m N 0.774
PK00601.1 Cannabis sativa PK00601.1 N 0.780
PK21390.1 Cannabis sativa PK21390.1 N 0.761
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.764
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.775
ppa000626m Prunus persica ppa000626m N 0.773
ppa000627m Prunus persica ppa000627m N 0.770
SB03G039600 Sorghum bicolor Sb03g039600 N 0.768
SB09G001090 Sorghum bicolor Sb09g001090 N 0.742