estExt_Genewise1.C_350182 (Physcomitrella patens)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 estExt_Genewise1.C_350182 T24806_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_350182 PUF 782 816
estExt_Genewise1.C_350182 PUF 818 851
estExt_Genewise1.C_350182 PUF 854 887
estExt_Genewise1.C_350182 PUF 890 924
estExt_Genewise1.C_350182 PUF 926 958
estExt_Genewise1.C_350182 PUF 963 997
estExt_Genewise1.C_350182 PUF 999 1033
estExt_Genewise1.C_350182 PUF 1046 1075

Links

Other PUF family RBPs
Other Physcomitrella patens RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.769
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.762
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.758
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.758
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.762
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.762
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.766
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.735
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.853
mgf006786m Mimulus guttatus mgf006786m N 0.707
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.739
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.704
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.931
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.772
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.768
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.712
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.751
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.732
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.824
e_gw1.6.102.1 Micromonas pusilla e_gw1.6.102.1 N 0.722
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.825
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.938
mgf011401m Mimulus guttatus mgf011401m N 0.713
mgf015234m Mimulus guttatus mgf015234m N 0.739
MDP0000277305 Malus x domestica MDP0000277305 N 0.705
MDP0000313902 Malus x domestica MDP0000313902 N 0.711
MDP0000314338 Malus x domestica MDP0000314338 N 0.764
MDP0000319167 Malus x domestica MDP0000319167 N 0.774
MDP0000776183 Malus x domestica MDP0000776183 N 0.758
ppa000626m Prunus persica ppa000626m N 0.773
ppa000627m Prunus persica ppa000627m N 0.770
ppa000731m Prunus persica ppa000731m N 0.768
ppa000898m Prunus persica ppa000898m N 0.713
MDP0000265231 Malus x domestica MDP0000265231 N 0.709
MDP0000191652 Malus x domestica MDP0000191652 N 0.745
MDP0000176743 Malus x domestica MDP0000176743 N 0.717
mgf015734m Mimulus guttatus mgf015734m N 0.774
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.738
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.702
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.746
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.742
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.740
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.766
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.761
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.713
ppa016404m Prunus persica ppa016404m N 0.713
PK00601.1 Cannabis sativa PK00601.1 N 0.780
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.742
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.740
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.740
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.725
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.783
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.780
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.700
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.708
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.775
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.753
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.753
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.709
PK01617.1 Cannabis sativa PK01617.1 N 0.762
PK12245.1 Cannabis sativa PK12245.1 N 0.702
PK21390.1 Cannabis sativa PK21390.1 N 0.761
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.744
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.740
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.747
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.710
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.736
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.754
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.736
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.736
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.707
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.740
29595.m000292 Ricinus communis 29595.m000292 N 0.754
30143.m001162 Ricinus communis 30143.m001162 N 0.733
30143.m001164 Ricinus communis 30143.m001164 N 0.769
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.743
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.768
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.764
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.766
SB09G001090 Sorghum bicolor Sb09g001090 N 0.742
SB04G037410 Sorghum bicolor Sb04g037410 N 0.745
SB03G039600 Sorghum bicolor Sb03g039600 N 0.768
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.754
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.709
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.752
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.700
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.743
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.764
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.745
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.775
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.728
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.769