estExt_Genewise1.C_350182 (Physcomitrella patens)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 estExt_Genewise1.C_350182 T24806_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_350182 PUF 782 816
estExt_Genewise1.C_350182 PUF 818 851
estExt_Genewise1.C_350182 PUF 854 887
estExt_Genewise1.C_350182 PUF 890 924
estExt_Genewise1.C_350182 PUF 926 958
estExt_Genewise1.C_350182 PUF 963 997
estExt_Genewise1.C_350182 PUF 999 1033
estExt_Genewise1.C_350182 PUF 1046 1075

Links

Other PUF family RBPs
Other Physcomitrella patens RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
KHSRP Homo sapiens ENSG00000088247 D 0.000
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.000
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.000
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.000
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.000
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.000
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.000
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.000
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.000
FUBP1 Oryctolagus cuniculus ENSOCUG00000002225 I 0.000
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.000
Fubp1 Mus musculus ENSMUSG00000028034 I 0.000
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.000
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.000
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.000
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.000
KHSRP Microcebus murinus ENSMICG00000007863 I 0.000
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.000
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.000
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.000
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.000
AAN77161 Xenopus laevis AAN77161 I 0.000
AAN77160 Xenopus laevis AAN77160 I 0.000
AAI69923 Xenopus laevis AAI69923 I 0.000
AAI69815 Xenopus laevis AAI69815 I 0.000
AAI61696 Xenopus laevis AAI61696 I 0.000
AAH70981 Xenopus laevis AAH70981 I 0.000
AAH44277 Xenopus laevis AAH44277 I 0.000
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.000
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.000
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.000
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.000
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.000
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.000
ENSTRUG00000004615 Takifugu rubripes ENSTRUG00000004615 I 0.000
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.000
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.000
KHSRP Sus scrofa ENSSSCG00000013538 I 0.000
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.000
Khsrp Mus musculus ENSMUSG00000007670 I 0.000
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.000
KHSRP Danio rerio ENSDARG00000026489 I 0.000
KHSRP Felis catus ENSFCAG00000003731 I 0.000
LOC100065608 Equus caballus ENSECAG00000018305 I 0.000
FUBP1 Equus caballus ENSECAG00000010867 I 0.000
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.000
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.000
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.000
fubp1 Danio rerio ENSDARG00000029248 I 0.000
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.000
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.000
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.000
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.000
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.000
KHSRP Canis familiaris ENSCAFG00000018667 I 0.000
LOC505564 Bos taurus ENSBTAG00000021018 I 0.000
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.000
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.000
FUBP1 Homo sapiens ENSG00000162613 I 0.000
ENSGACG00000016563 Gasterosteus aculeatus ENSGACG00000016563 I 0.000
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.000
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.000
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.000
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.000
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.000
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.000
A6QP83_BOVIN Bos taurus ENSBTAG00000013072 N 0.000
FUBP3 Tetraodon nigroviridis ENSTNIG00000009019 N 0.000
FUBP3 Cavia porcellus ENSCPOG00000010315 N 0.000
Ame_R003042 Ailuropoda melanoleuca Ame_R003042 N 0.000
FUBP3 Takifugu rubripes ENSTRUG00000013259 N 0.000
FUBP3 Meleagris gallopavo ENSMGAG00000005342 N 0.000
FUBP3 Gorilla gorilla ENSGGOG00000011318 N 0.000
LOC100399862 Callithrix jacchus ENSCJAG00000020542 N 0.000
FUBP3 Loxodonta africana ENSLAFG00000011611 N 0.000
fubp3 Xenopus tropicalis ENSXETG00000001344 N 0.000
FUBP3 Myotis lucifugus ENSMLUG00000008743 N 0.000
FUBP3 Microcebus murinus ENSMICG00000015452 N 0.000
FUBP3 Pan troglodytes ENSPTRG00000021474 N 0.000
FUBP1 Microcebus murinus ENSMICG00000014463 N 0.000
AAH60400 Xenopus laevis AAH60400 N 0.000
FUBP3 Canis familiaris ENSCAFG00000019942 N 0.000
FUBP3 Tetraodon nigroviridis ENSTNIG00000005858 N 0.000
FUBP3 Taeniopygia guttata ENSTGUG00000004662 N 0.000
ENSPPYG00000019693 Pongo pygmaeus ENSPPYG00000019693 N 0.000
FUBP3 Gasterosteus aculeatus ENSGACG00000016704 N 0.000
FUBP3 Ornithorhynchus anatinus ENSOANG00000001042 N 0.000
FUBP3 Felis catus ENSFCAG00000005113 N 0.000
FUBP3 Procavia capensis ENSPCAG00000001717 N 0.000
FUBP1 Ochotona princeps ENSOPRG00000001175 N 0.000
FUBP3 Oryzias latipes ENSORLG00000007103 N 0.000
FUBP3 Homo sapiens ENSG00000107164 N 0.000
LOC100069755 Equus caballus ENSECAG00000011500 N 0.000
Fubp3 Mus musculus ENSMUSG00000026843 N 0.000
Q5ZM76_CHICK Gallus gallus ENSGALG00000003941 N 0.000
ENSDARG00000007049 Danio rerio ENSDARG00000007049 N 0.000
FUBP3 Oryzias latipes ENSORLG00000017565 N 0.000
FUBP3 Dasypus novemcinctus ENSDNOG00000014533 N 0.000
FUBP3 Macaca mulatta ENSMMUG00000008249 N 0.000
Fubp3 Rattus norvegicus ENSRNOG00000009139 N 0.000
FUBP1 Pteropus vampyrus ENSPVAG00000014637 N 0.000
FUBP3 Monodelphis domestica ENSMODG00000012105 N 0.000
FUBP3 Pteropus vampyrus ENSPVAG00000001510 N 0.000
FUBP3 Ochotona princeps ENSOPRG00000008648 N 0.000