CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_350182
(
Physcomitrella patens
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
estExt_Genewise1.C_350182
T24806_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_350182
PUF
782
816
DITEHVVEFSVDQHGSRFIQQKLETATPEDKNMVF
estExt_Genewise1.C_350182
PUF
818
851
EVLPRALTLMTDVFGNYVIQKFFEHGTQQQRREL
estExt_Genewise1.C_350182
PUF
854
887
QLVGHVLVLSLQMYGCRVIQKALEVVDVDQQTVL
estExt_Genewise1.C_350182
PUF
890
924
ELDGHVMRCVRDQNGNHVIQKCIECVPPAKINFII
estExt_Genewise1.C_350182
PUF
926
958
AFYNQVVTLSTHPYGCRVIQRVLEHCTDEQKQK
estExt_Genewise1.C_350182
PUF
963
997
EILRSTCTLAQDQYGNYVVQHVLEHGRDYERTEII
estExt_Genewise1.C_350182
PUF
999
1033
KLAGQIVQMSQHKFASNVVEKCLEYGGPVERQILI
estExt_Genewise1.C_350182
PUF
1046
1075
LQAMMKDQFANYVVQKVLETCDESQRELLL
Links
Other
PUF
family RBPs
Other
Physcomitrella patens
RBPs
92 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava30949.valid.m1
Manihot esculenta
cassava30949.valid.m1
N
0.769
Glyma11g14500.1
Glycine max
Glyma11g14500.1
N
0.762
Glyma11g14530.1
Glycine max
Glyma11g14530.1
N
0.758
Glyma11g14550.1
Glycine max
Glyma11g14550.1
N
0.758
Glyma12g06430.1
Glycine max
Glyma12g06430.1
N
0.762
Glyma12g06450.1
Glycine max
Glyma12g06450.1
N
0.762
Glyma15g04060.1
Glycine max
Glyma15g04060.1
N
0.766
Glyma20g32230.1
Glycine max
Glyma20g32230.1
N
0.735
gw1.2.45.1
Selaginella moellendorfii
gw1.2.45.1
N
0.853
mgf006786m
Mimulus guttatus
mgf006786m
N
0.707
Glyma10g35290.1
Glycine max
Glyma10g35290.1
N
0.739
Glyma09g06460.1
Glycine max
Glyma09g06460.1
N
0.704
estExt_Genewise1.C_960051
Physcomitrella patens
estExt_Genewise1.C_960051
N
0.931
cassava33553.m1
Manihot esculenta
cassava33553.m1
N
0.772
Cucsa.138830
Cucumis sativus
Cucsa.138830
N
0.768
Cucsa.149730
Cucumis sativus
Cucsa.149730
N
0.712
Cucsa.165170
Cucumis sativus
Cucsa.165170
N
0.751
Cucsa.308530
Cucumis sativus
Cucsa.308530
N
0.732
e_gw1.2.1396.1
Selaginella moellendorfii
e_gw1.2.1396.1
N
0.824
e_gw1.6.102.1
Micromonas pusilla
e_gw1.6.102.1
N
0.722
e_gw1.7.1189.1
Selaginella moellendorfii
e_gw1.7.1189.1
N
0.825
e_gw1.96.1.1
Physcomitrella patens
e_gw1.96.1.1
N
0.938
mgf011401m
Mimulus guttatus
mgf011401m
N
0.713
mgf015234m
Mimulus guttatus
mgf015234m
N
0.739
MDP0000277305
Malus x domestica
MDP0000277305
N
0.705
MDP0000313902
Malus x domestica
MDP0000313902
N
0.711
MDP0000314338
Malus x domestica
MDP0000314338
N
0.764
MDP0000319167
Malus x domestica
MDP0000319167
N
0.774
MDP0000776183
Malus x domestica
MDP0000776183
N
0.758
ppa000626m
Prunus persica
ppa000626m
N
0.773
ppa000627m
Prunus persica
ppa000627m
N
0.770
ppa000731m
Prunus persica
ppa000731m
N
0.768
ppa000898m
Prunus persica
ppa000898m
N
0.713
MDP0000265231
Malus x domestica
MDP0000265231
N
0.709
MDP0000191652
Malus x domestica
MDP0000191652
N
0.745
MDP0000176743
Malus x domestica
MDP0000176743
N
0.717
mgf015734m
Mimulus guttatus
mgf015734m
N
0.774
GRMZM2G012964
Zea mays
GRMZM2G012964
N
0.738
GRMZM2G035118
Zea mays
GRMZM2G035118
N
0.702
GRMZM2G042623
Zea mays
GRMZM2G042623
N
0.746
GRMZM2G123537
Zea mays
GRMZM2G123537
N
0.742
Medtr1g120450
Medicago truncatula
Medtr1g120450
N
0.740
Medtr2g117180
Medicago truncatula
Medtr2g117180
N
0.766
Medtr4g084270
Medicago truncatula
Medtr4g084270
N
0.761
Medtr5g087730
Medicago truncatula
Medtr5g087730
N
0.713
ppa016404m
Prunus persica
ppa016404m
N
0.713
PK00601.1
Cannabis sativa
PK00601.1
N
0.780
BRADI3G55540
Brachypodium distachyon
BRADI3G55540
N
0.742
XM_002879157.1
Arabidopsis lyrata
fgenesh2_kg.4__893__AT2G29140.1
N
0.740
XM_002880988.1
Arabidopsis lyrata
fgenesh2_kg.4__898__AT2G29200.1
N
0.740
GSVIVG00016236001
Vitis vinifera
GSVIVG00016236001
N
0.725
GSVIVG00016507001
Vitis vinifera
GSVIVG00016507001
N
0.783
GSVIVG00024918001
Vitis vinifera
GSVIVG00024918001
N
0.780
GSVIVG00029553001
Vitis vinifera
GSVIVG00029553001
N
0.700
GSVIVG00031557001
Vitis vinifera
GSVIVG00031557001
N
0.708
LOC_Os01g62650
Oryza sativa
LOC_Os01g62650
N
0.775
BRADI2G39410
Brachypodium distachyon
BRADI2G39410
N
0.753
BRADI2G39240
Brachypodium distachyon
BRADI2G39240
N
0.753
BGIOSIBCE028530
Oryza indica
BGIOSIBCE028530
N
0.709
PK01617.1
Cannabis sativa
PK01617.1
N
0.762
PK12245.1
Cannabis sativa
PK12245.1
N
0.702
PK21390.1
Cannabis sativa
PK21390.1
N
0.761
APUM3
Arabidopsis thaliana
AT2G29140-TAIR-G
N
0.744
APUM2
Arabidopsis thaliana
AT2G29190-TAIR-G
N
0.740
APUM1
Arabidopsis thaliana
AT2G29200-TAIR-G
N
0.747
APUM4
Arabidopsis thaliana
AT3G10360-TAIR-G
N
0.710
BGIOSIBCE005171
Oryza indica
BGIOSIBCE005171
N
0.736
BGIOSIBCE017275
Oryza indica
BGIOSIBCE017275
N
0.754
LOC_Os01g74030
Oryza sativa
LOC_Os01g74030
N
0.736
LOC_Os02g57390
Oryza sativa
LOC_Os02g57390
N
0.736
XM_002884744.1
Arabidopsis lyrata
scaffold_301182.1
N
0.707
scaffold_4100004.1
Arabidopsis lyrata
scaffold_4100004.1
N
0.740
29595.m000292
Ricinus communis
29595.m000292
N
0.754
30143.m001162
Ricinus communis
30143.m001162
N
0.733
30143.m001164
Ricinus communis
30143.m001164
N
0.769
cassava10774.m1
Manihot esculenta
cassava10774.m1
N
0.743
cassava13144.valid.m1
Manihot esculenta
cassava13144.valid.m1
N
0.768
cassava19436.valid.m1
Manihot esculenta
cassava19436.valid.m1
N
0.764
cassava19437.valid.m1
Manihot esculenta
cassava19437.valid.m1
N
0.766
SB09G001090
Sorghum bicolor
Sb09g001090
N
0.742
SB04G037410
Sorghum bicolor
Sb04g037410
N
0.745
SB03G039600
Sorghum bicolor
Sb03g039600
N
0.768
LOC_Os05g01910
Oryza sativa
LOC_Os05g01910
N
0.754
LOC_Os08g40830
Oryza sativa
LOC_Os08g40830
N
0.709
B9GJ97_POPTR
Populus trichocarpa
POPTR_0001s25020
N
0.752
B9HK27_POPTR
Populus trichocarpa
POPTR_0008s00490
N
0.700
XM_002311043.1
Populus trichocarpa
POPTR_0008s03630
N
0.743
B9HMK2_POPTR
Populus trichocarpa
POPTR_0008s05850
N
0.764
B9HPE1_POPTR
Populus trichocarpa
POPTR_0009s03980
N
0.745
B9HTG3_POPTR
Populus trichocarpa
POPTR_0010s20870
N
0.775
B9HUI2_POPTR
Populus trichocarpa
POPTR_0010s23250
N
0.728
cassava30948.valid.m1
Manihot esculenta
cassava30948.valid.m1
N
0.769