D4ABW2_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000032168 T41215_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.819
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.819
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.819
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.799
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000052438 RRM 16 87
ENSRNOP00000052438 RRM 108 174

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

169 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.774
HNRNPA1 Homo sapiens ENSG00000135486 D 0.795
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.795
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.788
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.781
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.781
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.733
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.795
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.788
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.760
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.795
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.781
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.000
Gm8991 Mus musculus ENSMUSG00000059179 I 0.000
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.000
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.795
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.795
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.781
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.000
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.000
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.795
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.767
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.000
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.000
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.768
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.000
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.715
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.000
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.000
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.788
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.718
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.774
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.000
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.767
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.738
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.000
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.739
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.711
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.735
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.000
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.000
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.781
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.766
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.795
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.701
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.731
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.000
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.000
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.755
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.726
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.795
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.000
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.741
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.753
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.738
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.774
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.788
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.762
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.726
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.729
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.752
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.795
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.761
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.746
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.774
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.000
P51992 Xenopus laevis P51992 I 0.000
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.795
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.726
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.000
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.000
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.795
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.000
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.000
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.000
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.000
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.000
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.753
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.733
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.795
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.705
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.000
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.705
AAA49741 Xenopus laevis AAA49741 I 0.705
P51968 Xenopus laevis P51968 I 0.000
P17130 Xenopus laevis P17130 I 0.705
CBU92546 Xenopus laevis CBU92546 I 0.719
CBU92451 Xenopus laevis CBU92451 I 0.000
CBU92428 Xenopus laevis CBU92428 I 0.705
CBF67672 Xenopus laevis CBF67672 I 0.719
CBF67578 Xenopus laevis CBF67578 I 0.000
CBF67555 Xenopus laevis CBF67555 I 0.705
AAI69881 Xenopus laevis AAI69881 I 0.000
AAH72090 Xenopus laevis AAH72090 I 0.719
AAH45260 Xenopus laevis AAH45260 I 0.719
AAA49950 Xenopus laevis AAA49950 I 0.000
AAA49949 Xenopus laevis AAA49949 I 0.000
AAA49742 Xenopus laevis AAA49742 I 0.705
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.000
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.000
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.000
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.000
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.766
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.000
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.760
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.719
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.000
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.733
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.740
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.000
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.000
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.000
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.795
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.795
D3ZQR9_RAT Rattus norvegicus ENSRNOG00000027605 I 0.709
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.795
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.000
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.000
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.795
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.000
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.729
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.000
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.000
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.000
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.788
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.000
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.795
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.753
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.000
ENSRNOG00000031316 Rattus norvegicus ENSRNOG00000031316 I 0.000
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.795
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.747
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.736
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.752
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.760
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.731
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.000
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.745
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.718
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.764
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.000
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.712
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.752
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.746
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.705
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.000
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.000
ENSCAFG00000020428 Canis familiaris ENSCAFG00000020428 I 0.704
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.718
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.754
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.747
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.788
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.788
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.712
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.759
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.000
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.726
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.000
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.726
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.710
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.000
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.000
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.753
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.738
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.766
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.781
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.760
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.752
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.743
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.736
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.724
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.719
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.745
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.703
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.769
LOC785445 Bos taurus ENSBTAG00000025621 I 0.747
LOC781499 Bos taurus ENSBTAG00000021580 I 0.000
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.000
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.795
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.000
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.719
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.719
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.000
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.706
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.732
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.000
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.000
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.760
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.000
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.774
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.750
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.733
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.795
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.726
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.718
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.733
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.781
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.788
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.725
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.795
HNRNPA3 Homo sapiens ENSG00000170144 I 0.000
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.000
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.795
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.719
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.000
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.000
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.000
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.788
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.760
LOC100066794 Equus caballus ENSECAG00000023237 I 0.000
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.795
LOC100054206 Equus caballus ENSECAG00000006699 I 0.752
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.000
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.712
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.000
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.000
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.767
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.705
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.000
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.712
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.000
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.781
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.747
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.704
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.000
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.000
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.795
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.000
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.000
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.729
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.000
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.795
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.795
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.000
ENSCJAG00000017019 Callithrix jacchus ENSCJAG00000017019 I 0.000
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.733
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.704
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.740
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.767
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.753
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.774
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.000
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.000
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.000
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.733
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.719
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.000
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.795
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.000
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.000
zgc:66127 Danio rerio ENSDARG00000011020 I 0.000
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.767
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.000
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.000
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.740
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.795
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.719
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.000
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.753
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.781
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.781
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.000