Cucsa.242740 (Cucumis sativus)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		Cucsa.242740 T00192_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.242740.1 CCCH ZF 35 59
Cucsa.242740.1 CCCH ZF 101 126
Cucsa.242740.1 KH 170 232
Cucsa.242740.1 CCCH ZF 263 288
Cucsa.242740.2 CCCH ZF 31 56
Cucsa.242740.2 KH 100 162
Cucsa.242740.2 CCCH ZF 193 218

Links

Other CCCH ZF,KH family RBPs
Other Cucumis sativus RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27843.m000161 Ricinus communis 27843.m000161 N 0.871
27843.m000162 Ricinus communis 27843.m000162 N 0.864
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.817
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.817
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.810
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.824
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.752
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.739
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.803
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.818
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.809
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.814
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.858
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.850
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.886
chr5.LjT10N02.330.nd Lotus japonicus chr5.LjT10N02.330.nd N 0.722
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.786
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.913
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.752
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.886
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.886
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.886
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.864
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.879
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.864
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.725
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.814
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.817
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.794
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.802
GSVIVG00001369001 Vitis vinifera GSVIVG00001369001 N 0.784
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.793
GSVIVG00033508001 Vitis vinifera GSVIVG00033508001 N 0.802
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.826
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.819
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.803
MDP0000120315 Malus x domestica MDP0000120315 N 0.750
MDP0000130160 Malus x domestica MDP0000130160 N 0.750
MDP0000176924 Malus x domestica MDP0000176924 N 0.814
MDP0000202971 Malus x domestica MDP0000202971 N 0.814
MDP0000217837 Malus x domestica MDP0000217837 N 0.857
MDP0000263392 Malus x domestica MDP0000263392 N 0.809
MDP0000275117 Malus x domestica MDP0000275117 N 0.750
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.764
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.824
mgf001428m Mimulus guttatus mgf001428m N 0.738
mgf003025m Mimulus guttatus mgf003025m N 0.793
mgf010445m Mimulus guttatus mgf010445m N 0.779
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.852
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.810
ppa009199m Prunus persica ppa009199m N 0.857
ppa009316m Prunus persica ppa009316m N 0.886
SB04G006450 Sorghum bicolor Sb04g006450 N 0.800
SB06G032000 Sorghum bicolor Sb06g032000 N 0.801
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.817
XM_002884838.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3001010 N 0.724