estExt_Genewise1.C_350182 (Physcomitrella patens)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 estExt_Genewise1.C_350182 T24806_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_350182 PUF 782 816
estExt_Genewise1.C_350182 PUF 818 851
estExt_Genewise1.C_350182 PUF 854 887
estExt_Genewise1.C_350182 PUF 890 924
estExt_Genewise1.C_350182 PUF 926 958
estExt_Genewise1.C_350182 PUF 963 997
estExt_Genewise1.C_350182 PUF 999 1033
estExt_Genewise1.C_350182 PUF 1046 1075

Links

Other PUF family RBPs
Other Physcomitrella patens RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29848.m004524 Ricinus communis 29848.m004524 N 0.000
B9HB72_POPTR Populus trichocarpa POPTR_0006s28150 N 0.000
BGIOSIBCE005866 Oryza indica BGIOSIBCE005866 N 0.000
BRADI3G31900 Brachypodium distachyon BRADI3G31900 N 0.000
cassava18379.valid.m1 Manihot esculenta cassava18379.valid.m1 N 0.000
cassava8085.valid.m1 Manihot esculenta cassava8085.valid.m1 N 0.000
Cucsa.162880 Cucumis sativus Cucsa.162880 N 0.000
Glyma08g34030.1 Glycine max Glyma08g34030.1 N 0.000
Glyma16g15820.1 Glycine max Glyma16g15820.1 N 0.000
GRMZM2G133308 Zea mays GRMZM2G133308 N 0.000
GRMZM2G174785 Zea mays GRMZM2G174785 N 0.000
GSVIVG00035985001 Vitis vinifera GSVIVG00035985001 N 0.000
LjB10M19.170.nd Lotus japonicus LjB10M19.170.nd N 0.000
LOC_Os02g08360 Oryza sativa LOC_Os02g08360 N 0.000
MDP0000266453 Malus x domestica MDP0000266453 N 0.000
Medtr8g083970 Medicago truncatula Medtr8g083970 N 0.000
PK13350.1 Cannabis sativa PK13350.1 N 0.000
POPTR_0018s02740 Populus trichocarpa POPTR_0018s02740 N 0.000
ppa000894m Prunus persica ppa000894m N 0.000
SB04G005430 Sorghum bicolor Sb04g005430 N 0.000