CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_350182
(
Physcomitrella patens
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
estExt_Genewise1.C_350182
T24806_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_350182
PUF
782
816
DITEHVVEFSVDQHGSRFIQQKLETATPEDKNMVF
estExt_Genewise1.C_350182
PUF
818
851
EVLPRALTLMTDVFGNYVIQKFFEHGTQQQRREL
estExt_Genewise1.C_350182
PUF
854
887
QLVGHVLVLSLQMYGCRVIQKALEVVDVDQQTVL
estExt_Genewise1.C_350182
PUF
890
924
ELDGHVMRCVRDQNGNHVIQKCIECVPPAKINFII
estExt_Genewise1.C_350182
PUF
926
958
AFYNQVVTLSTHPYGCRVIQRVLEHCTDEQKQK
estExt_Genewise1.C_350182
PUF
963
997
EILRSTCTLAQDQYGNYVVQHVLEHGRDYERTEII
estExt_Genewise1.C_350182
PUF
999
1033
KLAGQIVQMSQHKFASNVVEKCLEYGGPVERQILI
estExt_Genewise1.C_350182
PUF
1046
1075
LQAMMKDQFANYVVQKVLETCDESQRELLL
Links
Other
PUF
family RBPs
Other
Physcomitrella patens
RBPs
92 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29848.m004524
Ricinus communis
29848.m004524
N
0.000
B9HB72_POPTR
Populus trichocarpa
POPTR_0006s28150
N
0.000
BGIOSIBCE005866
Oryza indica
BGIOSIBCE005866
N
0.000
BRADI3G31900
Brachypodium distachyon
BRADI3G31900
N
0.000
cassava18379.valid.m1
Manihot esculenta
cassava18379.valid.m1
N
0.000
cassava8085.valid.m1
Manihot esculenta
cassava8085.valid.m1
N
0.000
Cucsa.162880
Cucumis sativus
Cucsa.162880
N
0.000
Glyma08g34030.1
Glycine max
Glyma08g34030.1
N
0.000
Glyma16g15820.1
Glycine max
Glyma16g15820.1
N
0.000
GRMZM2G133308
Zea mays
GRMZM2G133308
N
0.000
GRMZM2G174785
Zea mays
GRMZM2G174785
N
0.000
GSVIVG00035985001
Vitis vinifera
GSVIVG00035985001
N
0.000
LjB10M19.170.nd
Lotus japonicus
LjB10M19.170.nd
N
0.000
LOC_Os02g08360
Oryza sativa
LOC_Os02g08360
N
0.000
MDP0000266453
Malus x domestica
MDP0000266453
N
0.000
Medtr8g083970
Medicago truncatula
Medtr8g083970
N
0.000
PK13350.1
Cannabis sativa
PK13350.1
N
0.000
POPTR_0018s02740
Populus trichocarpa
POPTR_0018s02740
N
0.000
ppa000894m
Prunus persica
ppa000894m
N
0.000
SB04G005430
Sorghum bicolor
Sb04g005430
N
0.000