DGIL_AUG5s5076g2t1 (Acyrtosiphon pisum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 DGIL_AUG5s5076g2t1 T32074_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.729
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.729
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.729
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.729
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
DGIL_AUG5s5076g2t1 RRM 4 74
DGIL_AUG5s5076g2t1 RRM 92 161
DGIL_AUG5s5076g2t1 RRM 185 253
DGIL_AUG5s5076g2t1 RRM 289 357

Links

Other RRM family RBPs
Other Acyrtosiphon pisum RBPs

119 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185682 Helobdella robusta 185682 I 0.712
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.739
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.739
AAA60936 Xenopus laevis AAA60936 I 0.742
AAEL010318 Aedes aegypti AAEL010318 I 0.800
AAH52100 Xenopus laevis AAH52100 I 0.742
AAH72110 Xenopus laevis AAH72110 I 0.731
AAH73435 Xenopus laevis AAH73435 I 0.734
AAI08463 Xenopus laevis AAI08463 I 0.731
AGAP011092 Anopheles gambiae AGAP011092 I 0.789
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.811
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.811
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.811
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.717
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.755
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.822
Bm1_06880 Brugia malayi Bm1_06880 I 0.709
Bm1_16080 Brugia malayi Bm1_16080 I 0.709
CAA40721 Xenopus laevis CAA40721 I 0.742
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.789
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.789
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.724
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.739
DGIL_AUG5s10130g1t1 Acyrtosiphon pisum DGIL_AUG5s10130g1t1 N 0.734
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.928
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.928
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.742
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.739
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.707
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.701
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.742
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.739
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.739
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.714
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.742
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.727
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.739
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.739
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.739
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.731
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.739
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.707
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.739
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.739
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.739
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.742
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.742
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.721
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.739
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.758
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.712
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.719
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.730
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.730
GD11341 Drosophila simulans FBgn0183090 I 0.722
GE11925 Drosophila yakuba FBgn0229707 I 0.725
GF12652 Drosophila ananassae FBgn0089688 I 0.719
GG21846 Drosophila erecta FBgn0114024 I 0.736
GH21052 Drosophila grimshawi FBgn0128514 I 0.745
GI18654 Drosophila mojavensis FBgn0141393 I 0.730
GJ21671 Drosophila virilis FBgn0208790 I 0.737
GK19652 Drosophila willistoni FBgn0221650 I 0.740
GL11548 Drosophila persimilis FBgn0149157 I 0.730
Gm10110 Mus musculus ENSMUSG00000062093 I 0.739
GM21847 Drosophila sechellia FBgn0176724 I 0.725
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.719
ISCW014211 Ixodes scapularis ISCW014211 I 0.748
LOAG_01058 Loa loa LOAG_01058 I 0.709
LOC100054235 Equus caballus ENSECAG00000009396 I 0.739
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.717
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.739
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.800
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.800
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.800
P20965 Xenopus laevis P20965 I 0.742
pAbp Drosophila melanogaster FBgn0261619 D 0.725
PABPC1 Homo sapiens ENSG00000070756 D 0.739
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.742
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.739
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.742
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.742
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.742
pabpc1a Danio rerio ENSDARG00000017219 I 0.739
pabpc1b Danio rerio ENSDARG00000021140 I 0.746
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.703
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.703
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.703
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.739
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.709
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.703
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.739
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.735
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.728
pabpc4 Danio rerio ENSDARG00000059259 I 0.731
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.739
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.739
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.728
PABPC4 Homo sapiens ENSG00000090621 D 0.739
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.735
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.742
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.739
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.735
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.739
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.735
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.721
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.739
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.735
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.739
PABPC4 Gallus gallus ENSGALG00000003800 I 0.738
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.739
PHUM617090 Pediculus humanus PHUM617090 I 0.808
Q6IP09 Xenopus laevis Q6IP09 I 0.731
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.724
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.735
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.717
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.734
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.734
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.735
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.739