ENSLAFG00000029171 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000029171 T38131_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.858
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.858
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.858
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.837
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000024273 RRM 12 80
ENSLAFP00000024273 RRM 101 168

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

207 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.762
AAA49742 Xenopus laevis AAA49742 I 0.762
AAA49949 Xenopus laevis AAA49949 I 0.727
AAA49950 Xenopus laevis AAA49950 I 0.717
AAH45260 Xenopus laevis AAH45260 I 0.776
AAH72090 Xenopus laevis AAH72090 I 0.776
AAI69881 Xenopus laevis AAI69881 I 0.717
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.825
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.769
CBF67555 Xenopus laevis CBF67555 I 0.762
CBF67578 Xenopus laevis CBF67578 I 0.717
CBF67672 Xenopus laevis CBF67672 I 0.776
CBU92428 Xenopus laevis CBU92428 I 0.762
CBU92451 Xenopus laevis CBU92451 I 0.717
CBU92546 Xenopus laevis CBU92546 I 0.776
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.706
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.725
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.769
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.797
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.783
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.818
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.794
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.748
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.787
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.809
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.755
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.727
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.782
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.701
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.790
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.733
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.816
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.724
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.799
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.736
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.811
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.830
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.703
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.729
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.727
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.741
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.731
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.835
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.719
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.728
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.794
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.807
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.810
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.794
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.734
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.766
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.803
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.741
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.755
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.738
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.816
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.755
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.776
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.708
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.755
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.713
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.783
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.769
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.762
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.713
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.825
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.748
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.804
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.769
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.748
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.825
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.769
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.729
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.797
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.825
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.776
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.818
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.734
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.706
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.769
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.825
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.825
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.762
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.706
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.818
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.741
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.727
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.804
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.825
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.790
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.806
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.780
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.825
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.809
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.811
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.729
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.748
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.710
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.712
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.720
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.747
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.769
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.759
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.766
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.797
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.811
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.825
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.797
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.811
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.818
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.769
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.797
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.811
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.818
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.825
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.811
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.804
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.710
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.818
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.748
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.745
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.804
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.825
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.790
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.762
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.748
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.720
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.790
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.804
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.716
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.741
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.825
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.730
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.748
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.825
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.755
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.790
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.727
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.825
Gm8991 Mus musculus ENSMUSG00000059179 I 0.727
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.825
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.741
HNRNPA1 Homo sapiens ENSG00000135486 D 0.825
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.720
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.825
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.825
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.783
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.804
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.825
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.703
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.734
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.727
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.729
HNRNPA3 Homo sapiens ENSG00000170144 I 0.729
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.727
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.729
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.729
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.729
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.729
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.727
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.729
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.734
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.729
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.722
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.729
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.729
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.729
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.729
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.727
LOC100054206 Equus caballus ENSECAG00000006699 I 0.809
LOC100066794 Equus caballus ENSECAG00000023237 I 0.727
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.729
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.818
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.762
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.825
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.811
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.797
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.729
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.811
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.825
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.804
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.818
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.825
LOC781499 Bos taurus ENSBTAG00000021580 I 0.729
LOC785445 Bos taurus ENSBTAG00000025621 I 0.790
P17130 Xenopus laevis P17130 I 0.762
P51968 Xenopus laevis P51968 I 0.727
P51992 Xenopus laevis P51992 I 0.717
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.741
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.825
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.825
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.811
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.825
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.825
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.825
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.729
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.773
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.825
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.787
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.707
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.823
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.790
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.776
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.769
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.748
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.780
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.701