PTBP2 (Taeniopygia guttata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTGUG00000005558 T41904_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.790
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.790
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.790
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000005736 RRM 61 117
ENSTGUP00000005736 RRM 183 249
ENSTGUP00000005736 RRM 340 406
ENSTGUP00000005736 RRM 457 520

Links

Other RRM family RBPs
Other Taeniopygia guttata RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.977
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.976
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.717
ROD1 Bos taurus ENSBTAG00000016750 I 0.716
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.709
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.790
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.786
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.977
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.774
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.725
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.977
PTBP2 Danio rerio ENSDARG00000015901 I 0.857
ptbp1a Danio rerio ENSDARG00000019362 I 0.733
ptbp1b Danio rerio ENSDARG00000031907 I 0.732
ROD1 Danio rerio ENSDARG00000043757 I 0.728
PTBP2 Dasypus novemcinctus ENSDNOG00000017687 N 0.825
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.716
Ptbp2 Dipodomys ordii ENSDORG00000011260 N 0.773
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.700
ROD1 Equus caballus ENSECAG00000021243 I 0.732
PTBP1 Equus caballus ENSECAG00000018845 I 0.763
LOC100057336 Equus caballus ENSECAG00000015783 I 0.977
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.782
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.984
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.823
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.725
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.826
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.721
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.977
ROD1 Homo sapiens ENSG00000119314 I 0.721
PTBP2 Homo sapiens ENSG00000117569 I 0.980
PTBP1 Homo sapiens ENSG00000011304 D 0.790
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.717
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.977
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.716
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.743
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.977
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.721
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.778
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.984
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.782
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.891
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.973
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.721
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.778
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.763
Rod1 Mus musculus ENSMUSG00000028382 I 0.721
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.977
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.957
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.732
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.980
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.756
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.977
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.725
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.823
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.842
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.720
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.721
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.790
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.977
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.721
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.790
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.980
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.770
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.763
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.980
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.721
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.879
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.782
ROD1 Sus scrofa ENSSSCG00000005466 I 0.732
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.774
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.721
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.977
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.875
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.770
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.977
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.977
AAF00041 Xenopus laevis AAF00041 I 0.756
AAH45068 Xenopus laevis AAH45068 I 0.767
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.709
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.709