chr1.CM0150.310.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr1.CM0150.310.nc T55797_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.809
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0150.310.nc RRM 32 92

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.885
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.838
XM_002890997.1 Arabidopsis lyrata fgenesh2_kg.1__3472__AT1G33470.1 N 0.738
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.701
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.871
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.710
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.809
AT1G33470 Arabidopsis thaliana AT1G33470-TAIR-G N 0.738
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.774
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.869
PK15672.1 Cannabis sativa PK15672.1 I 0.725
PK21213.1 Cannabis sativa PK21213.1 I 0.881
PK14266.1 Cannabis sativa PK14266.1 I 0.779
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.868
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.774
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.765
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.750
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.754
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.881
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.710
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.881
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.725
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.765
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.852
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.750
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.739
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.765
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.852
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.839
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.779
MDP0000181802 Malus x domestica MDP0000181802 N 0.823
MDP0000134468 Malus x domestica MDP0000134468 I 0.721
MDP0000271231 Malus x domestica MDP0000271231 N 0.823
MDP0000744398 Malus x domestica MDP0000744398 I 0.794
MDP0000184420 Malus x domestica MDP0000184420 I 0.750
MDP0000233609 Malus x domestica MDP0000233609 I 0.706
MDP0000244803 Malus x domestica MDP0000244803 N 0.705
MDP0000164846 Malus x domestica MDP0000164846 N 0.705
MDP0000284454 Malus x domestica MDP0000284454 I 0.750
MDP0000488395 Malus x domestica MDP0000488395 I 0.794
MDP0000548950 Malus x domestica MDP0000548950 I 0.794
MDP0000138486 Malus x domestica MDP0000138486 I 0.791
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.838
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.779
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.820
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.871
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.871
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.725
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.725
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.750
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.765
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.750
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.820
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.881
CU179634_3 Medicago truncatula CU179634_3 I 0.836
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.839
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.750
mgf017214m Mimulus guttatus mgf017214m I 0.853
mgf002440m Mimulus guttatus mgf002440m N 0.758
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.885
BGIOSIBCE022665 Oryza indica BGIOSIBCE022665 I 0.754
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.820
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.885
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.820
LOC_Os06g41790 Oryza sativa LOC_Os06g41790 I 0.754
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.869
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.735
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.750
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.853
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.779
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.754
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.765
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.838
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.806
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.852
ppa019392m Prunus persica ppa019392m I 0.710
ppa009564m Prunus persica ppa009564m I 0.839
ppa009716m Prunus persica ppa009716m I 0.809
ppa009964m Prunus persica ppa009964m I 0.779
ppa016222m Prunus persica ppa016222m I 0.779
ppa018603m Prunus persica ppa018603m I 0.710
ppa018926m Prunus persica ppa018926m I 0.710
29908.m006046 Ricinus communis 29908.m006046 I 0.721
29983.m003293 Ricinus communis 29983.m003293 I 0.738
30076.m004440 Ricinus communis 30076.m004440 I 0.779
30170.m013735 Ricinus communis 30170.m013735 I 0.855
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.902
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.765
SB10G024450 Sorghum bicolor Sb10g024450 N 0.738
SB03G046430 Sorghum bicolor Sb03g046430 N 0.820
SB03G041530 Sorghum bicolor Sb03g041530 I 0.885
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.934
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.750
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.750
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.839
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.885
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.869
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.754
GRMZM2G180639 Zea mays GRMZM2G180639 N 0.738