ROD1 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000003015 T34996_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.770
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.770
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.770
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000004485 RRM 55 101
ENSCAFP00000004485 RRM 179 245
ENSCAFP00000004485 RRM 355 421
ENSCAFP00000004485 RRM 472 536

Links

Other RRM family RBPs
Other Canis familiaris RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.941
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.941
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.941
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.937
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.937
ROD1 Homo sapiens ENSG00000119314 I 0.937
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.937
ROD1 Sus scrofa ENSSSCG00000005466 I 0.933
ROD1 Equus caballus ENSECAG00000021243 I 0.933
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.933
Rod1 Mus musculus ENSMUSG00000028382 I 0.929
ROD1 Bos taurus ENSBTAG00000016750 I 0.925
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.925
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.921
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.901
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.877
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.834
ROD1 Tursiops truncatus ENSTTRG00000009283 N 0.826
ROD1 Vicugna pacos ENSVPAG00000006136 N 0.825
ROD1 Choloepus hoffmanni ENSCHOG00000002039 N 0.810
ROD1 Sorex araneus ENSSARG00000002649 N 0.806
ROD1 Tarsius syrichta ENSTSYG00000010375 N 0.798
ROD1 Procavia capensis ENSPCAG00000002288 N 0.798
ROD1 Danio rerio ENSDARG00000043757 I 0.789
ROD1 Pteropus vampyrus ENSPVAG00000002177 N 0.785
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.776
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.773
AAF00041 Xenopus laevis AAF00041 I 0.770
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.770
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.770
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.770
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.767
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.767
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.767
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.767
AAH45068 Xenopus laevis AAH45068 I 0.764
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.763
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.763
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.763
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.763
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.763
PTBP1 Homo sapiens ENSG00000011304 D 0.763
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.760
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.754
ptbp1a Danio rerio ENSDARG00000019362 I 0.752
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.751
PTBP1 Equus caballus ENSECAG00000018845 I 0.747
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.736
ptbp1b Danio rerio ENSDARG00000031907 I 0.732
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.729
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.728
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.723
AAH97557 Xenopus laevis AAH97557 I 0.720
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.719
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.716
ROD1 Taeniopygia guttata ENSTGUG00000001262 N 0.714
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.712
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.707
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.704
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.700