Medtr6g030790 (Medicago truncatula)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Medtr6g030790 T62455_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr6g030790.1 YTH 476 566

Links

Other YTH family RBPs
Other Medicago truncatula RBPs

103 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Medtr6g030800 Medicago truncatula Medtr6g030800 N 1.000
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.912
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.901
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.890
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.879
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.857
29950.m001140 Ricinus communis 29950.m001140 N 0.824
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.813
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.802
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.802
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.791
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.791
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.791
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.791
SB01G008170 Sorghum bicolor Sb01g008170 N 0.791
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.791
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.791
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.791
SB02G003990 Sorghum bicolor Sb02g003990 N 0.780
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.780
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.780
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.780
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.780
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.780
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.780
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.780
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.780
MDP0000718677 Malus x domestica MDP0000718677 N 0.780
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.780
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.780
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.780
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.780
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.780
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.780
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.780
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.769
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.769
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.769
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.769
SB01G005500 Sorghum bicolor Sb01g005500 N 0.769
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.769
MDP0000129009 Malus x domestica MDP0000129009 N 0.769
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.758
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.758
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.758
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.758
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.758
mgf013935m Mimulus guttatus mgf013935m N 0.758
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.758
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.758
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.758
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.758
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.758
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.747
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.747
PK23716.1 Cannabis sativa PK23716.1 N 0.747
mgf013853m Mimulus guttatus mgf013853m N 0.747
mgf009938m Mimulus guttatus mgf009938m N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
SB07G006330 Sorghum bicolor Sb07g006330 N 0.736
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.736
MDP0000124048 Malus x domestica MDP0000124048 N 0.736
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.736
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.736
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.736
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.725
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.725
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.725
SB07G024500 Sorghum bicolor Sb07g024500 N 0.725
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.725
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.725
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.725
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.725
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.725
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.725
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.725
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.725
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.725
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.714
29929.m004643 Ricinus communis 29929.m004643 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.714
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.714
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.714
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.714
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.714
MDP0000488588 Malus x domestica MDP0000488588 N 0.714
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.703
SB06G027960 Sorghum bicolor Sb06g027960 N 0.703
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.703
PK17832.1 Cannabis sativa PK17832.1 N 0.703
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.703
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.703
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.703