CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RNF113A
(
Otolemur garnettii
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSOGAG00000016171
T03094_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000014480
CCCH ZF
196
222
YQPDICKDYKETGFCGFGDSCKFLHDR
Links
Other
CCCH ZF
family RBPs
Other
Otolemur garnettii
RBPs
256 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAA49741
Xenopus laevis
AAA49741
I
0.000
AAA49742
Xenopus laevis
AAA49742
I
0.000
AAH45260
Xenopus laevis
AAH45260
I
0.000
AAH72090
Xenopus laevis
AAH72090
I
0.000
Ame_R011792
Ailuropoda melanoleuca
Ame_R011792
I
0.000
CBF67555
Xenopus laevis
CBF67555
I
0.000
CBF67672
Xenopus laevis
CBF67672
I
0.000
CBU92428
Xenopus laevis
CBU92428
I
0.000
CBU92546
Xenopus laevis
CBU92546
I
0.000
ENSACAG00000007169
Anolis carolinensis
ENSACAG00000007169
I
0.000
ROA1_BOVIN
Bos taurus
ENSBTAG00000001553
I
0.000
ENSBTAG00000009937
Bos taurus
ENSBTAG00000009937
I
0.000
LOC785445
Bos taurus
ENSBTAG00000025621
I
0.000
XM_844664.1
Canis familiaris
ENSCAFG00000000687
I
0.000
ENSCAFG00000000746
Canis familiaris
ENSCAFG00000000746
I
0.000
ENSCAFG00000001973
Canis familiaris
ENSCAFG00000001973
I
0.000
ENSCAFG00000002059
Canis familiaris
ENSCAFG00000002059
I
0.000
XM_543834.2
Canis familiaris
ENSCAFG00000002157
I
0.000
ENSCAFG00000003418
Canis familiaris
ENSCAFG00000003418
I
0.000
ENSCAFG00000003493
Canis familiaris
ENSCAFG00000003493
I
0.000
ENSCAFG00000004202
Canis familiaris
ENSCAFG00000004202
I
0.000
XM_854536.1
Canis familiaris
ENSCAFG00000005046
I
0.000
ENSCAFG00000005164
Canis familiaris
ENSCAFG00000005164
I
0.000
ENSCAFG00000005207
Canis familiaris
ENSCAFG00000005207
I
0.000
ENSCAFG00000005308
Canis familiaris
ENSCAFG00000005308
I
0.000
ENSCAFG00000006036
Canis familiaris
ENSCAFG00000006036
I
0.000
XM_855847.1
Canis familiaris
ENSCAFG00000006327
I
0.000
XM_534786.2
Canis familiaris
ENSCAFG00000006580
I
0.000
XP_541811.1
Canis familiaris
ENSCAFG00000006586
I
0.000
ENSCAFG00000006663
Canis familiaris
ENSCAFG00000006663
I
0.000
ENSCAFG00000006784
Canis familiaris
ENSCAFG00000006784
I
0.000
ENSCAFG00000007198
Canis familiaris
ENSCAFG00000007198
I
0.000
ENSCAFG00000007879
Canis familiaris
ENSCAFG00000007879
I
0.000
ENSCAFG00000007918
Canis familiaris
ENSCAFG00000007918
I
0.000
ENSCAFG00000008379
Canis familiaris
ENSCAFG00000008379
I
0.000
ENSCAFG00000009412
Canis familiaris
ENSCAFG00000009412
I
0.000
ENSCAFG00000009606
Canis familiaris
ENSCAFG00000009606
I
0.000
ENSCAFG00000010153
Canis familiaris
ENSCAFG00000010153
I
0.000
ENSCAFG00000011035
Canis familiaris
ENSCAFG00000011035
I
0.000
ENSCAFG00000013303
Canis familiaris
ENSCAFG00000013303
I
0.000
ENSCAFG00000014094
Canis familiaris
ENSCAFG00000014094
I
0.000
ENSCAFG00000014691
Canis familiaris
ENSCAFG00000014691
I
0.000
ENSCAFG00000015319
Canis familiaris
ENSCAFG00000015319
I
0.000
XP_848548.1
Canis familiaris
ENSCAFG00000016313
I
0.000
ENSCAFG00000017316
Canis familiaris
ENSCAFG00000017316
I
0.000
ENSCAFG00000017494
Canis familiaris
ENSCAFG00000017494
I
0.000
ENSCAFG00000018186
Canis familiaris
ENSCAFG00000018186
I
0.000
ENSCAFG00000018456
Canis familiaris
ENSCAFG00000018456
I
0.000
ENSCAFG00000019104
Canis familiaris
ENSCAFG00000019104
I
0.000
ENSCAFG00000019118
Canis familiaris
ENSCAFG00000019118
I
0.000
ENSCAFG00000020238
Canis familiaris
ENSCAFG00000020238
I
0.000
ENSCAFG00000023056
Canis familiaris
ENSCAFG00000023056
I
0.000
XM_852631.1
Canis familiaris
ENSCAFG00000023680
I
0.000
ENSCAFG00000024636
Canis familiaris
ENSCAFG00000024636
I
0.000
ENSCAFG00000024824
Canis familiaris
ENSCAFG00000024824
I
0.000
ENSCAFG00000024951
Canis familiaris
ENSCAFG00000024951
I
0.000
ENSCAFG00000025274
Canis familiaris
ENSCAFG00000025274
I
0.000
ENSCJAG00000000095
Callithrix jacchus
ENSCJAG00000000095
I
0.000
ENSCJAG00000001302
Callithrix jacchus
ENSCJAG00000001302
I
0.000
ENSCJAG00000001353
Callithrix jacchus
ENSCJAG00000001353
I
0.000
ENSCJAG00000001737
Callithrix jacchus
ENSCJAG00000001737
I
0.000
LOC100409067
Callithrix jacchus
ENSCJAG00000003245
I
0.000
LOC100397230
Callithrix jacchus
ENSCJAG00000004031
I
0.000
ENSCJAG00000004902
Callithrix jacchus
ENSCJAG00000004902
I
0.000
ENSCJAG00000005326
Callithrix jacchus
ENSCJAG00000005326
I
0.000
ENSCJAG00000005407
Callithrix jacchus
ENSCJAG00000005407
I
0.000
ENSCJAG00000007250
Callithrix jacchus
ENSCJAG00000007250
I
0.000
ENSCJAG00000007639
Callithrix jacchus
ENSCJAG00000007639
I
0.000
LOC100413454
Callithrix jacchus
ENSCJAG00000009030
I
0.000
ENSCJAG00000009723
Callithrix jacchus
ENSCJAG00000009723
I
0.000
ENSCJAG00000010169
Callithrix jacchus
ENSCJAG00000010169
I
0.000
LOC100397230
Callithrix jacchus
ENSCJAG00000014791
I
0.000
ENSCJAG00000016375
Callithrix jacchus
ENSCJAG00000016375
I
0.000
ENSCJAG00000017130
Callithrix jacchus
ENSCJAG00000017130
I
0.000
LOC100397230
Callithrix jacchus
ENSCJAG00000018864
I
0.000
ENSCJAG00000019479
Callithrix jacchus
ENSCJAG00000019479
I
0.000
ENSCJAG00000020672
Callithrix jacchus
ENSCJAG00000020672
I
0.000
LOC100410389
Callithrix jacchus
ENSCJAG00000023392
I
0.000
ENSCJAG00000031552
Callithrix jacchus
ENSCJAG00000031552
I
0.000
ENSCJAG00000032417
Callithrix jacchus
ENSCJAG00000032417
I
0.000
ENSCJAG00000033784
Callithrix jacchus
ENSCJAG00000033784
I
0.000
ENSCJAG00000033856
Callithrix jacchus
ENSCJAG00000033856
I
0.000
ENSCJAG00000035202
Callithrix jacchus
ENSCJAG00000035202
I
0.000
ENSCPOG00000021077
Cavia porcellus
ENSCPOG00000021077
I
0.000
ENSDNOG00000009228
Dasypus novemcinctus
ENSDNOG00000009228
I
0.000
Hnrnpa1
Dipodomys ordii
ENSDORG00000010628
I
0.000
LOC100054206
Equus caballus
ENSECAG00000006699
I
0.000
Q6DTK6_HORSE
Equus caballus
ENSECAG00000008676
I
0.000
ENSEEUG00000000494
Erinaceus europaeus
ENSEEUG00000000494
I
0.000
ENSEEUG00000006130
Erinaceus europaeus
ENSEEUG00000006130
I
0.000
ENSETEG00000015332
Echinops telfairi
ENSETEG00000015332
I
0.000
ENSFCAG00000010150
Felis catus
ENSFCAG00000010150
I
0.000
HNRNPA1
Homo sapiens
ENSG00000135486
D
0.000
HNRNPA1L2
Homo sapiens
ENSG00000139675
D
0.000
ENSG00000215492
Homo sapiens
ENSG00000215492
I
0.000
ENSG00000231942
Homo sapiens
ENSG00000231942
I
0.000
ENSGACG00000009435
Gasterosteus aculeatus
ENSGACG00000009435
I
0.000
HNRNPA1
Gorilla gorilla
ENSGGOG00000003040
I
0.000
ENSGGOG00000024290
Gorilla gorilla
ENSGGOG00000024290
I
0.000
ENSGGOG00000025381
Gorilla gorilla
ENSGGOG00000025381
I
0.000
ENSGGOG00000025827
Gorilla gorilla
ENSGGOG00000025827
I
0.000
ENSLAFG00000026657
Loxodonta africana
ENSLAFG00000026657
I
0.000
ENSLAFG00000029587
Loxodonta africana
ENSLAFG00000029587
I
0.000
ENSLAFG00000030769
Loxodonta africana
ENSLAFG00000030769
I
0.000
ENSMGAG00000007630
Meleagris gallopavo
ENSMGAG00000007630
I
0.000
ENSMICG00000009289
Microcebus murinus
ENSMICG00000009289
I
0.000
ENSMICG00000012083
Microcebus murinus
ENSMICG00000012083
I
0.000
ENSMLUG00000000648
Myotis lucifugus
ENSMLUG00000000648
I
0.000
ENSMLUG00000000788
Myotis lucifugus
ENSMLUG00000000788
I
0.000
ENSMLUG00000003232
Myotis lucifugus
ENSMLUG00000003232
I
0.000
ENSMMUG00000004182
Macaca mulatta
ENSMMUG00000004182
I
0.000
ENSMMUG00000004528
Macaca mulatta
ENSMMUG00000004528
I
0.000
ENSMMUG00000005750
Macaca mulatta
ENSMMUG00000005750
I
0.000
ENSMMUG00000007695
Macaca mulatta
ENSMMUG00000007695
I
0.000
LOC710473
Macaca mulatta
ENSMMUG00000007887
I
0.000
LOC710473
Macaca mulatta
ENSMMUG00000007928
I
0.000
ENSMMUG00000008337
Macaca mulatta
ENSMMUG00000008337
I
0.000
XR_011984.1
Macaca mulatta
ENSMMUG00000011640
I
0.000
LOC710473
Macaca mulatta
ENSMMUG00000012989
I
0.000
XR_010472.1
Macaca mulatta
ENSMMUG00000012991
I
0.000
ENSMMUG00000013424
Macaca mulatta
ENSMMUG00000013424
I
0.000
ENSMMUG00000022448
Macaca mulatta
ENSMMUG00000022448
I
0.000
LOC710473
Macaca mulatta
ENSMMUG00000029402
I
0.000
ROA1_MACMU
Macaca mulatta
ENSMMUG00000031613
I
0.000
XM_001106745.1
Macaca mulatta
ENSMMUG00000031809
I
0.000
ENSMMUG00000031948
Macaca mulatta
ENSMMUG00000031948
I
0.000
ENSMODG00000006291
Monodelphis domestica
ENSMODG00000006291
I
0.000
ENSMODG00000023422
Monodelphis domestica
ENSMODG00000023422
I
0.000
ENSMUSG00000021927
Mus musculus
ENSMUSG00000021927
I
0.000
Hnrnpa1
Mus musculus
ENSMUSG00000046434
I
0.000
ENSOCUG00000010985
Oryctolagus cuniculus
ENSOCUG00000010985
I
0.000
ENSOCUG00000013350
Oryctolagus cuniculus
ENSOCUG00000013350
I
0.000
ENSOCUG00000021006
Oryctolagus cuniculus
ENSOCUG00000021006
I
0.000
ENSOCUG00000021007
Oryctolagus cuniculus
ENSOCUG00000021007
I
0.000
ENSOCUG00000022568
Oryctolagus cuniculus
ENSOCUG00000022568
I
0.000
ENSOCUG00000022627
Oryctolagus cuniculus
ENSOCUG00000022627
I
0.000
ENSOCUG00000022668
Oryctolagus cuniculus
ENSOCUG00000022668
I
0.000
ENSOCUG00000023322
Oryctolagus cuniculus
ENSOCUG00000023322
I
0.000
ENSOCUG00000023444
Oryctolagus cuniculus
ENSOCUG00000023444
I
0.000
ENSOCUG00000023674
Oryctolagus cuniculus
ENSOCUG00000023674
I
0.000
ENSOCUG00000028124
Oryctolagus cuniculus
ENSOCUG00000028124
I
0.000
ENSOGAG00000009945
Otolemur garnettii
ENSOGAG00000009945
I
0.000
ENSOGAG00000017179
Otolemur garnettii
ENSOGAG00000017179
I
0.000
ENSOPRG00000006107
Ochotona princeps
ENSOPRG00000006107
I
0.000
ENSPPYG00000003855
Pongo pygmaeus
ENSPPYG00000003855
I
0.000
ENSPPYG00000017853
Pongo pygmaeus
ENSPPYG00000017853
I
0.000
ROA1_PANTR
Pan troglodytes
ENSPTRG00000005035
I
0.000
ROA1_PANTR
Pan troglodytes
ENSPTRG00000028756
I
0.000
ROA1_PANTR
Pan troglodytes
ENSPTRG00000031363
I
0.000
HNRNPA1L2
Pan troglodytes
ENSPTRG00000032520
I
0.000
ENSPVAG00000000322
Pteropus vampyrus
ENSPVAG00000000322
I
0.000
ENSRNOG00000005951
Rattus norvegicus
ENSRNOG00000005951
I
0.000
ENSRNOG00000017651
Rattus norvegicus
ENSRNOG00000017651
I
0.000
ENSRNOG00000021280
Rattus norvegicus
ENSRNOG00000021280
I
0.000
D4A2D2_RAT
Rattus norvegicus
ENSRNOG00000021986
I
0.000
D4AD23_RAT
Rattus norvegicus
ENSRNOG00000025891
I
0.000
D4A491_RAT
Rattus norvegicus
ENSRNOG00000029531
I
0.000
ENSRNOG00000033182
Rattus norvegicus
ENSRNOG00000033182
I
0.000
Hnrnpa1
Rattus norvegicus
ENSRNOG00000036839
I
0.000
ENSRNOG00000039436
Rattus norvegicus
ENSRNOG00000039436
I
0.000
ENSSARG00000008946
Sorex araneus
ENSSARG00000008946
I
0.000
ENSSSCG00000000288
Sus scrofa
ENSSSCG00000000288
I
0.000
ENSSTOG00000015259
Spermophilus tridecemlineatus
ENSSTOG00000015259
I
0.000
ENSTBEG00000008238
Tupaia belangeri
ENSTBEG00000008238
I
0.000
ENSTBEG00000012511
Tupaia belangeri
ENSTBEG00000012511
I
0.000
ENSTBEG00000016272
Tupaia belangeri
ENSTBEG00000016272
I
0.000
ENSTTRG00000004505
Tursiops truncatus
ENSTTRG00000004505
I
0.000
hnrnpa1
Xenopus tropicalis
ENSXETG00000021277
I
0.000
P17130
Xenopus laevis
P17130
I
0.000