29908.m006046 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29908.m006046 T48707_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.765
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
29908.m006046 RRM 15 82

Links

Other RRM family RBPs
Other Ricinus communis RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.765
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.841
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.912
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.754
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.794
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.721
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.809
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.750
mgf017214m Mimulus guttatus mgf017214m I 0.809
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.706
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.926
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.794
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.765
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.706
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.794
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.855
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.706
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.794
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.841
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.739
CU179634_3 Medicago truncatula CU179634_3 I 0.750
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.794
MDP0000548950 Malus x domestica MDP0000548950 I 0.794
MDP0000744398 Malus x domestica MDP0000744398 I 0.794
MDP0000857317 Malus x domestica MDP0000857317 I 0.739
ppa009716m Prunus persica ppa009716m I 0.779
ppa009964m Prunus persica ppa009964m I 0.765
ppa016222m Prunus persica ppa016222m I 0.779
ppa018603m Prunus persica ppa018603m I 0.710
ppa018926m Prunus persica ppa018926m I 0.884
MDP0000488395 Malus x domestica MDP0000488395 I 0.794
MDP0000284454 Malus x domestica MDP0000284454 I 0.706
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.897
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.721
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.809
MDP0000118777 Malus x domestica MDP0000118777 I 0.739
MDP0000134468 Malus x domestica MDP0000134468 I 0.926
MDP0000138486 Malus x domestica MDP0000138486 I 0.765
MDP0000184420 Malus x domestica MDP0000184420 I 0.706
MDP0000233609 Malus x domestica MDP0000233609 I 0.882
ppa019392m Prunus persica ppa019392m I 0.884
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.721
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.765
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.899
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.779
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.706
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.706
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.750
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.721
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.897
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.779
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.710
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.706
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.706
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.706
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.725
PK21213.1 Cannabis sativa PK21213.1 I 0.794
PK15672.1 Cannabis sativa PK15672.1 I 0.884
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.765
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.779
PK14266.1 Cannabis sativa PK14266.1 I 0.779
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.868
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.926
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.706
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.706
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.765
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.824
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.754
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.765
29923.m000811 Ricinus communis 29923.m000811 I 0.706
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.750
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.706
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.725
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.725
30076.m004440 Ricinus communis 30076.m004440 I 0.779
SB03G041530 Sorghum bicolor Sb03g041530 I 0.706
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.721
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.797
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.812
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.797
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.783