B9N0D5_POPTR (Populus trichocarpa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 POPTR_0004s23250 T62244_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s23250.1 YTH 403 493

Links

Other YTH family RBPs
Other Populus trichocarpa RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.747
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.703
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.725
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.714
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.714
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.769
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.703
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.758
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.703
mgf019846m Mimulus guttatus mgf019846m N 0.736
mgf017987m Mimulus guttatus mgf017987m N 0.714
mgf015583m Mimulus guttatus mgf015583m N 0.703
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.703
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.747
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
mgf001716m Mimulus guttatus mgf001716m N 0.780
mgf014143m Mimulus guttatus mgf014143m N 0.703
mgf014829m Mimulus guttatus mgf014829m N 0.780
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.725
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.725
MDP0000488248 Malus x domestica MDP0000488248 N 0.846
MDP0000617859 Malus x domestica MDP0000617859 N 0.703
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.703
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.703
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.747
ppa002483m Prunus persica ppa002483m N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
ppa003557m Prunus persica ppa003557m N 0.868
ppa003664m Prunus persica ppa003664m N 0.725
MDP0000405927 Malus x domestica MDP0000405927 N 0.703
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
MDP0000287088 Malus x domestica MDP0000287088 N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.725
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.707
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.750
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
MDP0000171737 Malus x domestica MDP0000171737 N 0.758
MDP0000231231 Malus x domestica MDP0000231231 N 0.714
MDP0000256033 Malus x domestica MDP0000256033 N 0.846
MDP0000286471 Malus x domestica MDP0000286471 N 0.714
ppa018635m Prunus persica ppa018635m N 0.736
PK17832.1 Cannabis sativa PK17832.1 N 0.714
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.813
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.703
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.747
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.736
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.703
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.714
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.703
XM_002892481.1 Arabidopsis lyrata fgenesh2_kg.1__1037__AT1G09810.1 N 0.725
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.736
PK26094.1 Cannabis sativa PK26094.1 N 0.835
ECT11 Arabidopsis thaliana AT1G09810-TAIR-G N 0.725
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.736
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.703
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.703
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.703
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.868
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.868
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.736
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.736
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.714
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.714
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.703
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.703
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.868
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.868
29955.m001158 Ricinus communis 29955.m001158 N 0.736
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.725
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.714
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.934
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
SB07G006330 Sorghum bicolor Sb07g006330 N 0.703
SB09G000580 Sorghum bicolor Sb09g000580 N 0.725
29765.m000746 Ricinus communis 29765.m000746 N 0.879
29929.m004643 Ricinus communis 29929.m004643 N 0.714
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.703