gw1.198.66.1 (Physcomitrella patens)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 gw1.198.66.1 T62413_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.198.66.1 YTH 32 122

Links

Other YTH family RBPs
Other Physcomitrella patens RBPs

138 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.923
ppa003664m Prunus persica ppa003664m N 0.813
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.813
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.802
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.802
MDP0000171737 Malus x domestica MDP0000171737 N 0.802
MDP0000617859 Malus x domestica MDP0000617859 N 0.802
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.802
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.802
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.802
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.802
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.802
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.802
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.802
MDP0000287088 Malus x domestica MDP0000287088 N 0.802
MDP0000405927 Malus x domestica MDP0000405927 N 0.802
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.802
MDP0000552419 Malus x domestica MDP0000552419 N 0.791
ppa002483m Prunus persica ppa002483m N 0.791
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.791
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.791
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.791
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.791
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.791
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.791
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.791
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.791
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.791
ppa002588m Prunus persica ppa002588m N 0.791
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.791
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.791
MDP0000248088 Malus x domestica MDP0000248088 N 0.791
PK17832.1 Cannabis sativa PK17832.1 N 0.780
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.780
MDP0000286471 Malus x domestica MDP0000286471 N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.780
SB07G024500 Sorghum bicolor Sb07g024500 N 0.780
SB03G031190 Sorghum bicolor Sb03g031190 N 0.780
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.780
MDP0000231231 Malus x domestica MDP0000231231 N 0.780
SB07G006330 Sorghum bicolor Sb07g006330 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.769
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.769
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.769
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.769
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.769
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.769
PK23104.1 Cannabis sativa PK23104.1 N 0.769
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.769
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.758
29929.m004643 Ricinus communis 29929.m004643 N 0.758
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.758
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.747
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.747
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.747
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.747
SB06G027960 Sorghum bicolor Sb06g027960 N 0.747
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.747
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.747
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.747
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.747
PK01736.1 Cannabis sativa PK01736.1 N 0.747
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.736
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
PK26094.1 Cannabis sativa PK26094.1 N 0.725
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.725
mgf017987m Mimulus guttatus mgf017987m N 0.725
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.725
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.725
29890.m000285 Ricinus communis 29890.m000285 N 0.725
PK05579.1 Cannabis sativa PK05579.1 N 0.725
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
SB01G008170 Sorghum bicolor Sb01g008170 N 0.714
SB02G003990 Sorghum bicolor Sb02g003990 N 0.714
29765.m000746 Ricinus communis 29765.m000746 N 0.714
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.714
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.714
29889.m003364 Ricinus communis 29889.m003364 N 0.714
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.714
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.714
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
ppa018635m Prunus persica ppa018635m N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.714
mgf019821m Mimulus guttatus mgf019821m N 0.714
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.714
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.714
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.714
mgf014143m Mimulus guttatus mgf014143m N 0.714
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
mgf015583m Mimulus guttatus mgf015583m N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.703
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.703
mgf013853m Mimulus guttatus mgf013853m N 0.703
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.703
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.703
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.703
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.703
mgf009938m Mimulus guttatus mgf009938m N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
ppa002677m Prunus persica ppa002677m N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.703
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.703
MDP0000488588 Malus x domestica MDP0000488588 N 0.703
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.703
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703