BGIOSIBCE016517 (Oryza indica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 BGIOSIBCE016517 T61944_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE016517 YTH 117 204

Links

Other YTH family RBPs
Other Oryza indica RBPs

176 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.956
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.912
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.912
SB07G006330 Sorghum bicolor Sb07g006330 N 0.879
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.879
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.868
SB07G024500 Sorghum bicolor Sb07g024500 N 0.813
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.802
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.802
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.802
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.802
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.802
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.802
PK17832.1 Cannabis sativa PK17832.1 N 0.802
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.802
MDP0000405927 Malus x domestica MDP0000405927 N 0.802
MDP0000287088 Malus x domestica MDP0000287088 N 0.802
ppa002483m Prunus persica ppa002483m N 0.802
MDP0000617859 Malus x domestica MDP0000617859 N 0.802
ppa002588m Prunus persica ppa002588m N 0.802
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.791
29929.m004643 Ricinus communis 29929.m004643 N 0.791
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.791
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.791
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.791
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.791
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.791
MDP0000248088 Malus x domestica MDP0000248088 N 0.791
MDP0000552419 Malus x domestica MDP0000552419 N 0.791
SB06G027960 Sorghum bicolor Sb06g027960 N 0.791
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.791
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.791
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.791
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.791
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.780
ppa003664m Prunus persica ppa003664m N 0.780
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.780
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.780
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.780
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.780
mgf019821m Mimulus guttatus mgf019821m N 0.769
PK01736.1 Cannabis sativa PK01736.1 N 0.769
mgf013853m Mimulus guttatus mgf013853m N 0.769
mgf009938m Mimulus guttatus mgf009938m N 0.769
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.769
ppa018635m Prunus persica ppa018635m N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.758
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.758
MDP0000286471 Malus x domestica MDP0000286471 N 0.758
MDP0000231231 Malus x domestica MDP0000231231 N 0.758
MDP0000171737 Malus x domestica MDP0000171737 N 0.758
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.758
29889.m003364 Ricinus communis 29889.m003364 N 0.758
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.758
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.758
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.758
PK02315.1 Cannabis sativa PK02315.1 N 0.758
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.747
MDP0000306387 Malus x domestica MDP0000306387 N 0.747
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.747
MDP0000132385 Malus x domestica MDP0000132385 N 0.747
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.747
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.747
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.747
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.747
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.747
PK23104.1 Cannabis sativa PK23104.1 N 0.747
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.747
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.747
SB02G003990 Sorghum bicolor Sb02g003990 N 0.736
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.736
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.736
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.736
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.736
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.736
mgf017987m Mimulus guttatus mgf017987m N 0.736
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.736
mgf014143m Mimulus guttatus mgf014143m N 0.736
mgf015583m Mimulus guttatus mgf015583m N 0.736
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.736
SB01G005500 Sorghum bicolor Sb01g005500 N 0.736
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.736
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.736
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.736
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.736
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.736
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.736
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.736
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.736
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.736
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.725
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.725
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.725
mgf001716m Mimulus guttatus mgf001716m N 0.725
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.725
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.725
mgf013935m Mimulus guttatus mgf013935m N 0.725
MDP0000718677 Malus x domestica MDP0000718677 N 0.725
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.725
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.725
mgf014829m Mimulus guttatus mgf014829m N 0.725
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.725
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.725
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.725
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.725
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.725
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.725
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.725
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.725
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.725
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.725
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.725
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.725
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.725
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.725
SB01G008170 Sorghum bicolor Sb01g008170 N 0.725
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.725
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
29890.m000285 Ricinus communis 29890.m000285 N 0.725
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.725
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.725
29950.m001140 Ricinus communis 29950.m001140 N 0.725
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.725
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.725
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.725
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.725
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.725
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.725
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.725
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.725
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.725
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.725
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.714
PK05579.1 Cannabis sativa PK05579.1 N 0.714
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.714
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.714
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
PK23716.1 Cannabis sativa PK23716.1 N 0.714
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.714
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.714
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.714
GRMZM2G363789 Zea mays GRMZM2G363789 N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.714
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.714
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.714
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.714
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.714
MDP0000488588 Malus x domestica MDP0000488588 N 0.714
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.714
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.714
MDP0000129009 Malus x domestica MDP0000129009 N 0.714
BGIOSIBCE028833 Oryza indica BGIOSIBCE028833 N 0.705
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.703
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.703
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.703
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.703
MDP0000256033 Malus x domestica MDP0000256033 N 0.703
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.703
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.703
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.703
mgf019846m Mimulus guttatus mgf019846m N 0.703
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.703
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.703
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.703