cassava29576.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava29576.valid.m1 T04781_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava29576.valid.m1 CCCH ZF 49 75
cassava29576.valid.m1 CCCH ZF 95 120
cassava29576.valid.m1 CCCH ZF 140 166
cassava29576.valid.m1 CCCH ZF 295 321
cassava29576.valid.m1 CCCH ZF 341 367

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29647.m002009 Ricinus communis 29647.m002009 N 0.888
29726.m004014 Ricinus communis 29726.m004014 N 0.754
30128.m009030 Ricinus communis 30128.m009030 N 0.739
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.859
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.719
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.701
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.711
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.709
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.716
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.716
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.711
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.711
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.739
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.746
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.733
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.724
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.711
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.866
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.716
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.731
Glyma10g02540.1 Glycine max Glyma10g02540.1 N 0.807
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.873
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.739
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.701
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.724
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.724
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.704
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.719
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.724
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.724
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.731
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.724
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.873
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.776
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.769
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.726
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.711
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.716
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.719
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.731
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.724
MDP0000207283 Malus x domestica MDP0000207283 N 0.866
MDP0000319251 Malus x domestica MDP0000319251 N 0.746
MDP0000535412 Malus x domestica MDP0000535412 N 0.746
MDP0000808281 Malus x domestica MDP0000808281 N 0.770
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.731
mgf001793m Mimulus guttatus mgf001793m N 0.761
mgf002685m Mimulus guttatus mgf002685m N 0.739
mgf004851m Mimulus guttatus mgf004851m N 0.761
mgf008934m Mimulus guttatus mgf008934m N 0.719
mgf010716m Mimulus guttatus mgf010716m N 0.761
PK23881.1 Cannabis sativa PK23881.1 N 0.709
PK29685.1 Cannabis sativa PK29685.1 N 0.731
ppa005056m Prunus persica ppa005056m N 0.754
ppa005229m Prunus persica ppa005229m N 0.873
ppa005813m Prunus persica ppa005813m N 0.731
SB03G009930 Sorghum bicolor Sb03g009930 N 0.711
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.731
SB05G013190 Sorghum bicolor Sb05g013190 N 0.724
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.859