PABPC1L (Oryctolagus cuniculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOCUG00000003005 T39614_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.787
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.787
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.787
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.777
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.741
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000002613 RRM 13 83
ENSOCUP00000002613 RRM 101 168
ENSOCUP00000002613 RRM 192 261
ENSOCUP00000002613 RRM 295 363

Links

Other RRM family RBPs
Other Oryctolagus cuniculus RBPs

129 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1 Homo sapiens ENSG00000070756 D 0.810
PABPC3 Homo sapiens ENSG00000151846 D 0.760
PABPC4 Homo sapiens ENSG00000090621 D 0.799
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.799
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.781
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.803
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.778
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.781
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.803
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.810
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.950
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.867
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.789
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.824
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.806
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.796
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.882
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.806
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.799
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.796
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.770
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.771
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.710
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.799
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.789
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.939
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.810
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.799
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.935
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.806
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.767
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.914
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.810
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.775
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.767
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.717
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.738
AAA60936 Xenopus laevis AAA60936 I 0.774
AAH52100 Xenopus laevis AAH52100 I 0.778
AAH71118 Xenopus laevis AAH71118 I 0.835
AAH72110 Xenopus laevis AAH72110 I 0.792
AAH73435 Xenopus laevis AAH73435 I 0.792
AAH80020 Xenopus laevis AAH80020 I 0.839
AAI08463 Xenopus laevis AAI08463 I 0.792
AAK29408 Xenopus laevis AAK29408 I 0.839
CAA40721 Xenopus laevis CAA40721 I 0.778
P20965 Xenopus laevis P20965 I 0.778
Q6GR16 Xenopus laevis Q6GR16 I 0.835
Q6IP09 Xenopus laevis Q6IP09 I 0.792
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.943
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.789
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.703
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.792
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.774
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.792
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.799
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.789
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.896
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.810
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.903
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.792
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.731
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.817
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.703
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.703
Q98SP8 Xenopus laevis Q98SP8 I 0.839
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.738
pabpc1b Danio rerio ENSDARG00000021140 I 0.782
pabpc4 Danio rerio ENSDARG00000059259 I 0.778
LOC100054235 Equus caballus ENSECAG00000009396 I 0.803
LOC100070836 Equus caballus ENSECAG00000022681 I 0.943
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.792
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.910
PABPC1L Homo sapiens ENSG00000101104 I 0.939
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.792
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.796
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.792
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.771
PABPC4 Gallus gallus ENSGALG00000003800 I 0.789
PABPC1L Gallus gallus ENSGALG00000004123 I 0.853
pabpc1a Danio rerio ENSDARG00000017219 I 0.789
pabpc1l Danio rerio ENSDARG00000002597 I 0.799
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.707
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.846
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.806
PABPC1L Bos taurus ENSBTAG00000016849 I 0.950
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.799
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.810
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.803
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.939
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.796
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.810
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.928
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.785
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.799
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.914
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.799
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.939
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.803
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.782
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.799
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.806
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.763
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.778
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.889
Gm10110 Mus musculus ENSMUSG00000062093 I 0.803
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.806
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.789
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.803
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.810
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.810
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.810
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.789
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.892
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.921
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.810
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.878
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.853
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.803
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.921
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.771
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.803
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.943
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.810
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.778
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.800
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.728
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.950
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.720