pabpc4 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000010946 T42870_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.857
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.835
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.835
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.835
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.774
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000023927 RRM 13 66
ENSXETP00000023927 RRM 101 169
ENSXETP00000023927 RRM 193 261
ENSXETP00000023927 RRM 306 374
ENSXETP00000023929 RRM 1 40
ENSXETP00000023929 RRM 75 143

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC3 Homo sapiens ENSG00000151846 D 0.774
PABPC1 Homo sapiens ENSG00000070756 D 0.835
PABPC4 Homo sapiens ENSG00000090621 D 0.857
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.839
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.771
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.846
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.785
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.821
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.835
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.857
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.835
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.731
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.720
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.882
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.753
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.839
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.835
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.720
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.720
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.849
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.821
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.803
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.724
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.857
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.753
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.857
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.792
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.717
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.835
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.857
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.720
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.838
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.785
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.810
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.793
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.908
AAA60936 Xenopus laevis AAA60936 I 0.824
AAH52100 Xenopus laevis AAH52100 I 0.828
AAH71118 Xenopus laevis AAH71118 I 0.756
AAH72110 Xenopus laevis AAH72110 I 0.835
AAH73435 Xenopus laevis AAH73435 I 0.932
AAH80020 Xenopus laevis AAH80020 I 0.749
AAI08463 Xenopus laevis AAI08463 I 0.835
AAK29408 Xenopus laevis AAK29408 I 0.749
CAA40721 Xenopus laevis CAA40721 I 0.828
P20965 Xenopus laevis P20965 I 0.828
Q6GR16 Xenopus laevis Q6GR16 I 0.756
Q6IP09 Xenopus laevis Q6IP09 I 0.835
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.724
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.821
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.707
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.867
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.746
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.806
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.871
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.742
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.824
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.814
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.703
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.835
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.842
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.738
ISCW014211 Ixodes scapularis ISCW014211 I 0.701
PHUM617090 Pediculus humanus PHUM617090 I 0.714
Q98SP8 Xenopus laevis Q98SP8 I 0.749
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.753
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.835
LOC100054235 Equus caballus ENSECAG00000009396 I 0.857
LOC100056021 Equus caballus ENSECAG00000020699 I 0.717
LOC100070836 Equus caballus ENSECAG00000022681 I 0.720
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.853
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.713
PABPC1L Homo sapiens ENSG00000101104 I 0.717
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.703
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.746
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.821
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.796
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.864
PABPC4 Gallus gallus ENSGALG00000003800 I 0.896
PABPC1L Gallus gallus ENSGALG00000004123 I 0.774
pabpc4 Danio rerio ENSDARG00000059259 I 0.871
pabpc1b Danio rerio ENSDARG00000021140 I 0.800
pabpc1a Danio rerio ENSDARG00000017219 I 0.817
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.767
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.839
PABPC1L Bos taurus ENSBTAG00000016849 I 0.728
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.857
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.835
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.857
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.720
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.853
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.835
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.706
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.806
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.864
pabpc1l Danio rerio ENSDARG00000002597 I 0.742
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.857
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.717
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.738
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.799
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.885
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.846
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.839
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.774
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.771
Gm10110 Mus musculus ENSMUSG00000062093 I 0.849
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.839
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.903
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.853
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.731
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.835
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.707
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.742
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.832
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.857
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.717
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.835
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.728
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.778
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.857
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.720
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.817
PABPC4 Myotis lucifugus ENSMLUG00000012068 I 0.734
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.860
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.720
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.835
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.789
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.835