PTBP2 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000004211 T39071_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.794
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.794
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.794
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000005193 RRM 59 115
ENSMODP00000005193 RRM 181 247
ENSMODP00000005193 RRM 343 409
ENSMODP00000005193 RRM 460 524
ENSMODP00000005198 RRM 30 86
ENSMODP00000005198 RRM 152 218
ENSMODP00000029148 RRM 30 86
ENSMODP00000029148 RRM 152 218
ENSMODP00000029148 RRM 309 375
ENSMODP00000029148 RRM 426 490

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

87 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A8R3Y9_BOVIN Bos taurus ENSBTAG00000008809 N 0.887
AAF00041 Xenopus laevis AAF00041 I 0.760
AAH45068 Xenopus laevis AAH45068 I 0.771
AAH97557 Xenopus laevis AAH97557 I 0.702
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.996
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.704
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.735
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.992
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.794
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.729
LOC100057336 Equus caballus ENSECAG00000015783 I 0.988
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.733
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.782
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.782
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.786
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.774
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.747
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.720
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.782
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.760
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.767
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.728
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.786
PTBP1 Homo sapiens ENSG00000011304 D 0.794
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.754
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.778
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.767
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.790
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.717
PTBP1 Equus caballus ENSECAG00000018845 I 0.767
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.728
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.790
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.767
ptbp1a Danio rerio ENSDARG00000019362 I 0.748
ptbp1b Danio rerio ENSDARG00000031907 I 0.724
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.996
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.996
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.823
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.973
PTBP2 Procavia capensis ENSPCAG00000010292 N 0.992
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.996
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.996
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.996
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.973
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.992
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.864
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.898
PTBP2 Tupaia belangeri ENSTBEG00000010797 N 0.992
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.838
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.996
PTBP2 Dasypus novemcinctus ENSDNOG00000017687 N 0.848
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.826
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.996
PTBP2 Danio rerio ENSDARG00000015901 I 0.850
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.996
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.812
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.996
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.996
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.988
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.910
PTBP2 Homo sapiens ENSG00000117569 I 0.996
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.996
Ptbp2 Dipodomys ordii ENSDORG00000011260 N 0.789
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.996
PTBP2 Callithrix jacchus ENSCJAG00000018172 N 0.758
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.977
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.786
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.988
Rod1 Mus musculus ENSMUSG00000028382 I 0.729
ROD1 Danio rerio ENSDARG00000043757 I 0.728
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.709
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.717
ROD1 Bos taurus ENSBTAG00000016750 I 0.724
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.733
ROD1 Equus caballus ENSECAG00000021243 I 0.739
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.729
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.725
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.733
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.729
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.729
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.729
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.729
ROD1 Sus scrofa ENSSSCG00000005466 I 0.739
ROD1 Homo sapiens ENSG00000119314 I 0.729
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.725
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.794