LOC_Os07g39560 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os07g39560 T45084_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os07g39560.1 RRM 8 76
LOC_Os07g39560.1 RRM 108 177
LOC_Os07g39560.2 RRM 8 76
LOC_Os07g39560.2 RRM 108 177
LOC_Os07g39560.3 RRM 8 76
LOC_Os07g39560.3 RRM 108 177

Links

Other RRM family RBPs
Other Oryza sativa RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.770
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.763
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.791
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.763
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.770
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.763
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.777
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.770
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.829
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.950
PK13457.1 Cannabis sativa PK13457.1 N 0.799
PK25912.1 Cannabis sativa PK25912.1 N 0.820
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.806
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.777
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.763
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.784
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.791
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.784
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.791
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.770
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.777
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.771
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.755
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.763
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.755
MDP0000204698 Malus x domestica MDP0000204698 N 0.806
MDP0000320618 Malus x domestica MDP0000320618 N 0.806
MDP0000609551 Malus x domestica MDP0000609551 N 0.799
MDP0000188788 Malus x domestica MDP0000188788 N 0.799
MDP0000642684 Malus x domestica MDP0000642684 N 0.799
MDP0000907782 Malus x domestica MDP0000907782 N 0.799
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.813
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.842
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.799
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.813
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.813
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.791
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.784
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.799
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.719
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.784
mgf012147m Mimulus guttatus mgf012147m N 0.777
mgf009385m Mimulus guttatus mgf009385m N 0.799
mgf009486m Mimulus guttatus mgf009486m N 0.757
mgf004139m Mimulus guttatus mgf004139m N 0.777
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.993
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.843
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.820
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.806
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.766
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.791
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.813
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.791
ppa004834m Prunus persica ppa004834m N 0.806
ppa005119m Prunus persica ppa005119m N 0.806
ppa005132m Prunus persica ppa005132m N 0.806
ppa005122m Prunus persica ppa005122m N 0.806
27613.m000635 Ricinus communis 27613.m000635 N 0.827
30048.m000319 Ricinus communis 30048.m000319 N 0.820
29608.m000212 Ricinus communis 29608.m000212 N 0.820
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.734
SB02G005620 Sorghum bicolor Sb02g005620 N 0.921
SB02G005670 Sorghum bicolor Sb02g005670 N 0.921
SB02G037690 Sorghum bicolor Sb02g037690 N 0.971
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.791
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.813
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.921
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.957
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.957
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.914
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.921