cassava23406.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava23406.valid.m1 T49198_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.855
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava23406.valid.m1 RRM 15 83

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH78008 Xenopus laevis AAH78008 N 0.000
amel4_ncbi_hmm3606 Apis mellifera amel4_ncbi_hmm3606 N 0.000
BGIBMGA008619 Bombyx mori BGIBMGA008619 N 0.000
CPIJ002557 Culex quinquefasciatus CPIJ002557 N 0.000
CpipJ_CPIJ002557 Culex pipiens CpipJ_CPIJ002557 N 0.000
aff4 Danio rerio ENSDARG00000001857 N 0.000
ENSRNOG00000031218 Rattus norvegicus ENSRNOG00000031218 N 0.000
zcchc10 Xenopus tropicalis ENSXETG00000004171 N 0.000
e_gw.326.71.1 Branchiostoma floridae e_gw.326.71.1 N 0.000
CG5516 Drosophila melanogaster FBgn0038389 N 0.000
GA18942-RA Drosophila pseudoobscura FBgn0078941 N 0.000
nasonia_NCBI_hmm378444 Nasonia vitripennis nasonia_NCBI_hmm378444 N 0.000