Ame_R019277 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R019277 T55659_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.921
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.814
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.814
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.814
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.753
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R019277 RRM 13 66
Ame_R019277 RRM 114 182
Ame_R019277 RRM 206 275
Ame_R019277 RRM 309 377

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

129 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA60936 Xenopus laevis AAA60936 I 0.785
AAH52100 Xenopus laevis AAH52100 I 0.789
AAH71118 Xenopus laevis AAH71118 I 0.746
AAH72110 Xenopus laevis AAH72110 I 0.799
AAH73435 Xenopus laevis AAH73435 I 0.853
AAH80020 Xenopus laevis AAH80020 I 0.742
AAI08463 Xenopus laevis AAI08463 I 0.799
AAK29408 Xenopus laevis AAK29408 I 0.742
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.799
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.735
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.707
CAA40721 Xenopus laevis CAA40721 I 0.789
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.703
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.703
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.803
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.756
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.817
PABPC1L Bos taurus ENSBTAG00000016849 I 0.738
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.921
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.814
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.928
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.728
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.918
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.814
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.720
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.785
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.918
pabpc1l Danio rerio ENSDARG00000002597 I 0.738
pabpc1a Danio rerio ENSDARG00000017219 I 0.785
pabpc1b Danio rerio ENSDARG00000021140 I 0.775
pabpc4 Danio rerio ENSDARG00000059259 I 0.853
LOC100054235 Equus caballus ENSECAG00000009396 I 0.928
LOC100056021 Equus caballus ENSECAG00000020699 I 0.703
LOC100070836 Equus caballus ENSECAG00000022681 I 0.731
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.907
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.728
PABPC1 Homo sapiens ENSG00000070756 D 0.814
PABPC4 Homo sapiens ENSG00000090621 D 0.921
PABPC1L Homo sapiens ENSG00000101104 I 0.731
PABPC3 Homo sapiens ENSG00000151846 D 0.753
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.742
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.781
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.767
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.846
PABPC4 Gallus gallus ENSGALG00000003800 I 0.867
PABPC1L Gallus gallus ENSGALG00000004123 I 0.760
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.921
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.731
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.928
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.720
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.814
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.735
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.763
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.928
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.735
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.882
PABPC4 Myotis lucifugus ENSMLUG00000012068 I 0.801
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.925
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.735
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.814
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.767
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.811
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.738
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.746
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.778
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.864
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.907
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.817
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.756
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.760
Gm10110 Mus musculus ENSMUSG00000062093 I 0.910
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.817
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.860
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.921
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.738
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.814
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.814
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.807
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.814
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.724
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.918
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.789
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.781
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.724
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.846
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.821
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.921
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.785
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.731
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.814
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.921
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.735
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.817
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.763
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.720
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.814
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.817
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.760
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.907
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.760
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.882
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.925
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.814
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.742
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.781
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.860
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.738
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.817
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.781
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.758
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.842
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.746
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.781
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.849
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.738
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.789
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.792
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.717
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.814
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.703
PABPC4 Vicugna pacos ENSVPAG00000010041 N 0.712
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.796
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.908
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.728
P20965 Xenopus laevis P20965 I 0.789
PHUM617090 Pediculus humanus PHUM617090 I 0.714
Q6GR16 Xenopus laevis Q6GR16 I 0.746
Q6IP09 Xenopus laevis Q6IP09 I 0.799
Q98SP8 Xenopus laevis Q98SP8 I 0.742