PTBP2 (Meleagris gallopavo)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMGAG00000007308 T38380_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.802
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.802
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.802
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000007440 RRM 27 83
ENSMGAP00000007440 RRM 149 215
ENSMGAP00000007440 RRM 295 361
ENSMGAP00000007440 RRM 412 476

Links

Other RRM family RBPs
Other Meleagris gallopavo RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Homo sapiens ENSG00000011304 D 0.802
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.729
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.835
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.988
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.802
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.729
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.992
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.802
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.729
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.704
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.849
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.732
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.790
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.774
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.992
Rod1 Mus musculus ENSMUSG00000028382 I 0.729
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.992
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.767
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.992
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.733
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.782
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.794
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.774
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.774
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.992
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.992
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.717
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.721
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.992
AAF00041 Xenopus laevis AAF00041 I 0.767
AAH45068 Xenopus laevis AAH45068 I 0.779
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.992
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.729
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.988
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.729
ROD1 Sus scrofa ENSSSCG00000005466 I 0.739
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.895
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.786
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.984
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.876
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.702
AAH97557 Xenopus laevis AAH97557 I 0.709
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.988
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.984
ROD1 Equus caballus ENSECAG00000021243 I 0.739
PTBP1 Equus caballus ENSECAG00000018845 I 0.774
LOC100057336 Equus caballus ENSECAG00000015783 I 0.984
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.728
ROD1 Danio rerio ENSDARG00000043757 I 0.735
ptbp1b Danio rerio ENSDARG00000031907 I 0.735
ptbp1a Danio rerio ENSDARG00000019362 I 0.744
PTBP2 Danio rerio ENSDARG00000015901 I 0.854
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.786
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.733
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.992
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.794
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.717
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.992
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.798
ROD1 Bos taurus ENSBTAG00000016750 I 0.724
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.725
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.712
PTBP2 Homo sapiens ENSG00000117569 I 0.992
ROD1 Homo sapiens ENSG00000119314 I 0.729
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.728
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.790
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.794
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.906
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.973
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.743
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.729
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.992
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.992
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.725
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.729
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.824
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.736
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.834
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.755
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.794
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 1.000
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.992
PTBP2 Dasypus novemcinctus ENSDNOG00000017687 N 0.840
Ptbp2 Dipodomys ordii ENSDORG00000011260 N 0.789