SB03G041530 (Sorghum bicolor)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Sb03g041530 T45965_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Sb03g041530.1 RRM 18 76

Links

Other RRM family RBPs
Other Sorghum bicolor RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.735
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.735
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.706
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.721
ppa019392m Prunus persica ppa019392m I 0.000
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.721
mgf016660m Mimulus guttatus mgf016660m I 0.000
mgf017214m Mimulus guttatus mgf017214m I 0.765
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.000
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.710
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.706
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.721
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.735
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.000
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.000
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.791
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.000
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.791
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.750
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.000
CU179634_3 Medicago truncatula CU179634_3 I 0.731
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.791
ppa018926m Prunus persica ppa018926m I 0.000
ppa018603m Prunus persica ppa018603m I 0.000
ppa016222m Prunus persica ppa016222m I 0.750
ppa009964m Prunus persica ppa009964m I 0.721
ppa009716m Prunus persica ppa009716m I 0.735
MDP0000857317 Malus x domestica MDP0000857317 I 0.000
MDP0000744398 Malus x domestica MDP0000744398 I 0.765
MDP0000548950 Malus x domestica MDP0000548950 I 0.765
MDP0000488395 Malus x domestica MDP0000488395 I 0.750
MDP0000284454 Malus x domestica MDP0000284454 I 0.000
MDP0000184420 Malus x domestica MDP0000184420 I 0.000
MDP0000138486 Malus x domestica MDP0000138486 I 0.716
MDP0000134468 Malus x domestica MDP0000134468 I 0.000
MDP0000118777 Malus x domestica MDP0000118777 I 0.000
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.750
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.885
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.000
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.000
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.000
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.000
PK14266.1 Cannabis sativa PK14266.1 I 0.735
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.750
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.898
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.706
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.750
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.864
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.000
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.000
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.000
BGIOSIBCE008701 Oryza indica BGIOSIBCE008701 I 0.000
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.000
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.000
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.806
PK21213.1 Cannabis sativa PK21213.1 I 0.776
PK15672.1 Cannabis sativa PK15672.1 I 0.000
LOC_Os02g51890 Oryza sativa LOC_Os02g51890 I 0.000
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.000
30076.m004440 Ricinus communis 30076.m004440 I 0.735
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.000
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.750
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.735
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.000
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.721
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.765
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.779
29908.m006046 Ricinus communis 29908.m006046 I 0.706
SB04G030020 Sorghum bicolor Sb04g030020 I 0.000
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.735
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.000
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.779
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.765
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.765
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.000
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.000
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.000
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.000
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.000
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.000