cassava23406.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava23406.valid.m1 T49198_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.855
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava23406.valid.m1 RRM 15 83

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPSG_00634 Coccidioides posadasii CPSG_00634 N 0.000
fgenesh1_pg.C_scaffold_3158000001 Capitella teleta fgenesh1_pg.C_scaffold_3158000001 N 0.000
LOC_Os02g33340 Oryza sativa LOC_Os02g33340 N 0.000
BRADI4G12955 Brachypodium distachyon BRADI4G12955 N 0.000
SS1G_14517 Sclerotinia sclerotiorum SS1G_14517 N 0.000
SS1G_14025 Sclerotinia sclerotiorum SS1G_14025 N 0.000
SS1G_09531 Sclerotinia sclerotiorum SS1G_09531 N 0.000
SS1G_06437 Sclerotinia sclerotiorum SS1G_06437 N 0.000
SS1G_05465 Sclerotinia sclerotiorum SS1G_05465 N 0.000
SS1G_04258 Sclerotinia sclerotiorum SS1G_04258 N 0.000
SS1G_03724 Sclerotinia sclerotiorum SS1G_03724 N 0.000
GSTUMT00000525001 Tuber melanosporum GSTUMT00000525001 N 0.000