PTBP2 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000017343 T38081_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.798
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.798
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.798
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000014545 RRM 24 81
ENSLAFP00000014545 RRM 148 214
ENSLAFP00000014545 RRM 303 369
ENSLAFP00000014545 RRM 420 484
ENSLAFP00000022616 RRM 58 114
ENSLAFP00000022616 RRM 180 246
ENSLAFP00000022616 RRM 337 403
ENSLAFP00000022616 RRM 454 518

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 1.000
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.977
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.733
ROD1 Bos taurus ENSBTAG00000016750 I 0.732
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.725
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.794
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.798
PTBP2 Canis familiaris ENSCAFG00000020080 I 1.000
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.786
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.740
PTBP2 Cavia porcellus ENSCPOG00000003762 I 1.000
PTBP2 Danio rerio ENSDARG00000015901 I 0.854
ptbp1a Danio rerio ENSDARG00000019362 I 0.748
ptbp1b Danio rerio ENSDARG00000031907 I 0.732
ROD1 Danio rerio ENSDARG00000043757 I 0.735
PTBP2 Dasypus novemcinctus ENSDNOG00000017687 N 0.852
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.728
Ptbp2 Dipodomys ordii ENSDORG00000011260 N 0.793
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.712
ROD1 Equus caballus ENSECAG00000021243 I 0.747
PTBP1 Equus caballus ENSECAG00000018845 I 0.774
LOC100057336 Equus caballus ENSECAG00000015783 I 0.992
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.794
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.992
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.816
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.736
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.830
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.736
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 1.000
ROD1 Homo sapiens ENSG00000119314 I 0.736
PTBP2 Homo sapiens ENSG00000117569 I 1.000
PTBP1 Homo sapiens ENSG00000011304 D 0.802
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.733
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.728
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.755
PTBP2 Macaca mulatta ENSMMUG00000016130 I 1.000
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.736
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.790
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.992
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.794
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.914
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.790
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.736
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.996
Rod1 Mus musculus ENSMUSG00000028382 I 0.736
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.774
Ptbp2 Mus musculus ENSMUSG00000028134 I 1.000
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.743
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.980
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.767
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 1.000
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 1.000
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.740
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.732
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.842
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.704
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.827
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.736
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.802
PTBP2 Pan troglodytes ENSPTRG00000000987 I 1.000
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.736
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.802
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.996
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.782
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.774
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.996
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.736
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.902
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.794
ROD1 Sus scrofa ENSSSCG00000005466 I 0.747
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.786
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.977
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.729
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.702
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 1.000
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.868
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.774
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 1.000
PTBP2 Vicugna pacos ENSVPAG00000002841 I 1.000
AAH45068 Xenopus laevis AAH45068 I 0.779
AAF00041 Xenopus laevis AAF00041 I 0.767
AAH97557 Xenopus laevis AAH97557 I 0.709
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.721
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.717