XM_002880217.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pg.C_scaffold_4002831 T44442_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.710
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_4002831 RRM 25 93

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.739
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.739
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.710
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.710
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.000
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.000
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.739
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.986
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.000
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.000
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.710
PK14266.1 Cannabis sativa PK14266.1 I 0.855
PK21213.1 Cannabis sativa PK21213.1 I 0.768
PK15672.1 Cannabis sativa PK15672.1 I 0.783
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.768
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.000
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.000
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.739
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.855
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.855
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.884
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.725
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.884
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.739
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.768
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.725
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.725
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.768
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.739
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.710
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.870
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.000
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.855
MDP0000744398 Malus x domestica MDP0000744398 I 0.884
MDP0000118777 Malus x domestica MDP0000118777 I 0.797
MDP0000134468 Malus x domestica MDP0000134468 I 0.739
MDP0000857317 Malus x domestica MDP0000857317 I 0.797
MDP0000138486 Malus x domestica MDP0000138486 I 0.768
MDP0000184420 Malus x domestica MDP0000184420 I 0.739
MDP0000233609 Malus x domestica MDP0000233609 I 0.710
MDP0000488395 Malus x domestica MDP0000488395 I 0.870
MDP0000548950 Malus x domestica MDP0000548950 I 0.884
MDP0000284454 Malus x domestica MDP0000284454 I 0.754
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.725
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.739
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.725
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.899
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.812
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.884
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.725
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.797
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.768
CU179634_3 Medicago truncatula CU179634_3 I 0.725
mgf017214m Mimulus guttatus mgf017214m I 0.783
mgf016660m Mimulus guttatus mgf016660m I 0.000
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.000
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.000
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.000
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.797
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.783
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.000
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.797
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.884
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.812
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.754
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.884
ppa019392m Prunus persica ppa019392m I 0.754
ppa009716m Prunus persica ppa009716m I 0.783
ppa009964m Prunus persica ppa009964m I 0.768
ppa016222m Prunus persica ppa016222m I 0.884
ppa018603m Prunus persica ppa018603m I 0.826
ppa018926m Prunus persica ppa018926m I 0.754
30170.m013735 Ricinus communis 30170.m013735 I 0.000
29908.m006046 Ricinus communis 29908.m006046 I 0.710
30076.m004440 Ricinus communis 30076.m004440 I 0.884
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.710
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.841
SB04G030020 Sorghum bicolor Sb04g030020 I 0.000
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.000
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.739
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.884
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.000
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.000
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.000