cassava23405.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava23405.valid.m1 T49197_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.855
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava23405.valid.m1 RRM 15 83

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.754
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.710
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.725
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.855
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.725
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.783
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.725
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.725
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.710
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.855
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.768
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.710
PK14266.1 Cannabis sativa PK14266.1 I 0.710
PK21213.1 Cannabis sativa PK21213.1 I 0.841
PK15672.1 Cannabis sativa PK15672.1 I 0.768
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.841
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.768
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.754
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.754
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.710
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.754
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.739
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.725
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.754
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.797
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.739
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.797
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.739
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.739
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.725
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.739
MDP0000284454 Malus x domestica MDP0000284454 I 0.739
MDP0000138486 Malus x domestica MDP0000138486 I 0.841
MDP0000488395 Malus x domestica MDP0000488395 I 0.725
MDP0000134468 Malus x domestica MDP0000134468 I 0.725
MDP0000857317 Malus x domestica MDP0000857317 I 0.725
MDP0000118777 Malus x domestica MDP0000118777 I 0.725
MDP0000548950 Malus x domestica MDP0000548950 I 0.725
MDP0000744398 Malus x domestica MDP0000744398 I 0.725
MDP0000184420 Malus x domestica MDP0000184420 I 0.783
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.725
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 1.000
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.725
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.710
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.754
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.812
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.812
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.710
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.768
CU179634_3 Medicago truncatula CU179634_3 I 0.826
mgf016660m Mimulus guttatus mgf016660m I 0.725
mgf017214m Mimulus guttatus mgf017214m I 0.855
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.710
BGIOSIBCE008701 Oryza indica BGIOSIBCE008701 I 0.725
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.710
LOC_Os02g51890 Oryza sativa LOC_Os02g51890 I 0.725
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.754
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.710
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.797
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.783
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.739
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.754
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.725
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.812
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.841
ppa009716m Prunus persica ppa009716m I 0.797
ppa016222m Prunus persica ppa016222m I 0.710
ppa018603m Prunus persica ppa018603m I 0.710
ppa018926m Prunus persica ppa018926m I 0.768
ppa009964m Prunus persica ppa009964m I 0.884
ppa019392m Prunus persica ppa019392m I 0.768
29908.m006046 Ricinus communis 29908.m006046 I 0.725
30076.m004440 Ricinus communis 30076.m004440 I 0.725
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.739
SB04G030020 Sorghum bicolor Sb04g030020 I 0.710
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.739
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.710
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.768
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.754
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.710