nasonia_NCBI_hmm394743 (Nasonia vitripennis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 nasonia_NCBI_hmm394743 T32234_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.766
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.746
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.736
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.736
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
nasonia_NCBI_hmm394743 RRM 13 83
nasonia_NCBI_hmm394743 RRM 101 170
nasonia_NCBI_hmm394743 RRM 194 263
nasonia_NCBI_hmm394743 RRM 298 366

Links

Other RRM family RBPs
Other Nasonia vitripennis RBPs

131 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC4 Homo sapiens ENSG00000090621 D 0.753
pAbp Drosophila melanogaster FBgn0261619 D 0.779
PABPC3 Homo sapiens ENSG00000151846 D 0.703
PABPC1 Homo sapiens ENSG00000070756 D 0.746
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.703
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.763
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.742
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.746
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.728
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.787
GF12652 Drosophila ananassae FBgn0089688 I 0.784
GG21846 Drosophila erecta FBgn0114024 I 0.779
GH21052 Drosophila grimshawi FBgn0128514 I 0.787
GI18654 Drosophila mojavensis FBgn0141393 I 0.794
GL11548 Drosophila persimilis FBgn0149157 I 0.787
GM21847 Drosophila sechellia FBgn0176724 I 0.779
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.756
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.707
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.746
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.710
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.746
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.749
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.714
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.749
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.731
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.749
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.746
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.753
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.702
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.749
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.742
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.727
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.742
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.742
GD11341 Drosophila simulans FBgn0183090 I 0.777
GJ21671 Drosophila virilis FBgn0208790 I 0.791
GK19652 Drosophila willistoni FBgn0221650 I 0.787
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.727
AAA60936 Xenopus laevis AAA60936 I 0.756
AAH52100 Xenopus laevis AAH52100 I 0.760
AAH71118 Xenopus laevis AAH71118 I 0.710
AAH72110 Xenopus laevis AAH72110 I 0.756
AAH73435 Xenopus laevis AAH73435 I 0.756
AAH80020 Xenopus laevis AAH80020 I 0.710
AAI08463 Xenopus laevis AAI08463 I 0.756
AAK29408 Xenopus laevis AAK29408 I 0.710
CAA40721 Xenopus laevis CAA40721 I 0.760
P20965 Xenopus laevis P20965 I 0.760
Q6GR16 Xenopus laevis Q6GR16 I 0.710
Q6IP09 Xenopus laevis Q6IP09 I 0.756
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.709
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.709
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.727
GE11925 Drosophila yakuba FBgn0229707 I 0.779
ISCW014211 Ixodes scapularis ISCW014211 I 0.791
PHUM617090 Pediculus humanus PHUM617090 I 0.875
185682 Helobdella robusta 185682 I 0.719
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.773
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.737
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.758
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.769
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.719
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.727
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.758
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.872
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.728
Q98SP8 Xenopus laevis Q98SP8 I 0.710
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.857
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.707
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.753
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.746
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.728
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.753
pabpc1a Danio rerio ENSDARG00000017219 I 0.760
pabpc1b Danio rerio ENSDARG00000021140 I 0.754
pabpc4 Danio rerio ENSDARG00000059259 I 0.746
LOC100054235 Equus caballus ENSECAG00000009396 I 0.749
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.756
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.710
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.753
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.763
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.749
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.746
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.749
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.925
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.925
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.925
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.779
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.800
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.771
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 1.000
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 1.000
AAEL010318 Aedes aegypti AAEL010318 I 0.871
AGAP011092 Anopheles gambiae AGAP011092 I 0.843
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.857
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.707
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.749
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.746
PABPC4 Gallus gallus ENSGALG00000003800 I 0.749
PABPC1L Gallus gallus ENSGALG00000004123 I 0.714
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.749
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.749
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.746
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.746
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.746
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.746
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.746
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.753
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.731
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.753
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.753
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.714
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.746
Gm10110 Mus musculus ENSMUSG00000062093 I 0.746
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.717
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.749
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.753
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.749
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.746
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.714
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.749
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.731
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.753
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.746
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.710
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.746
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.724
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.746
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.742
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.753
CBG07431 Caenorhabditis briggsae CBG07431 N 0.702