CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.96.1.1
(
Physcomitrella patens
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
e_gw1.96.1.1
T24757_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.96.1.1
PUF
801
835
DIAGHVVEFSADQHGSRFIQQKLETATLEDKNMVF
e_gw1.96.1.1
PUF
837
871
EVLPRALVLMTDVFGNYVIQKFFEHGTHQQRRELA
e_gw1.96.1.1
PUF
873
908
KLEGQVLVLSLQMYGCRVIQKALEVVDVDQQTQLVS
e_gw1.96.1.1
PUF
909
943
ELDGNVMRCVRDQNGNHVIQKCIECVPPAKIHFII
e_gw1.96.1.1
PUF
945
977
AFYNQVVTLSTHPYGCRVIQRVLEHCTDEQKQK
e_gw1.96.1.1
PUF
982
1016
EILRSTCTLAQDQYGNYVVQHVLEHGRDHERSEII
e_gw1.96.1.1
PUF
1018
1052
KLAGQIVQMSQHKFASNVVEKCLEYGGPVERQILI
e_gw1.96.1.1
PUF
1065
1094
LQAMMKDQFANYVVQKVLETCDESQRELLL
Links
Other
PUF
family RBPs
Other
Physcomitrella patens
RBPs
99 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29595.m000292
Ricinus communis
29595.m000292
N
0.750
30143.m001162
Ricinus communis
30143.m001162
N
0.744
30143.m001164
Ricinus communis
30143.m001164
N
0.783
30169.m006300
Ricinus communis
30169.m006300
N
0.712
APUM3
Arabidopsis thaliana
AT2G29140-TAIR-G
N
0.751
APUM2
Arabidopsis thaliana
AT2G29190-TAIR-G
N
0.747
APUM1
Arabidopsis thaliana
AT2G29200-TAIR-G
N
0.755
APUM4
Arabidopsis thaliana
AT3G10360-TAIR-G
N
0.717
BGIOSIBCE005171
Oryza indica
BGIOSIBCE005171
N
0.754
BGIOSIBCE017275
Oryza indica
BGIOSIBCE017275
N
0.768
BGIOSIBCE028530
Oryza indica
BGIOSIBCE028530
N
0.727
BRADI2G39240
Brachypodium distachyon
BRADI2G39240
N
0.756
BRADI2G39410
Brachypodium distachyon
BRADI2G39410
N
0.756
BRADI3G55540
Brachypodium distachyon
BRADI3G55540
N
0.745
cassava10774.m1
Manihot esculenta
cassava10774.m1
N
0.750
cassava13144.valid.m1
Manihot esculenta
cassava13144.valid.m1
N
0.786
cassava19436.valid.m1
Manihot esculenta
cassava19436.valid.m1
N
0.783
cassava19437.valid.m1
Manihot esculenta
cassava19437.valid.m1
N
0.781
cassava30948.valid.m1
Manihot esculenta
cassava30948.valid.m1
N
0.781
cassava30949.valid.m1
Manihot esculenta
cassava30949.valid.m1
N
0.781
cassava33553.m1
Manihot esculenta
cassava33553.m1
N
0.772
cassava43126.valid.m1
Manihot esculenta
cassava43126.valid.m1
N
0.702
cassava9350.m1
Manihot esculenta
cassava9350.m1
N
0.705
Cucsa.138830
Cucumis sativus
Cucsa.138830
N
0.783
Cucsa.149730
Cucumis sativus
Cucsa.149730
N
0.730
Cucsa.165170
Cucumis sativus
Cucsa.165170
N
0.765
Cucsa.308530
Cucumis sativus
Cucsa.308530
N
0.739
estExt_Genewise1.C_350182
Physcomitrella patens
estExt_Genewise1.C_350182
N
0.938
estExt_Genewise1.C_960051
Physcomitrella patens
estExt_Genewise1.C_960051
N
0.935
e_gw1.2.1396.1
Selaginella moellendorfii
e_gw1.2.1396.1
N
0.821
e_gw1.6.102.1
Micromonas pusilla
e_gw1.6.102.1
N
0.710
e_gw1.7.1189.1
Selaginella moellendorfii
e_gw1.7.1189.1
N
0.841
XM_002879157.1
Arabidopsis lyrata
fgenesh2_kg.4__893__AT2G29140.1
N
0.744
XM_002880988.1
Arabidopsis lyrata
fgenesh2_kg.4__898__AT2G29200.1
N
0.747
Glyma09g06460.1
Glycine max
Glyma09g06460.1
N
0.725
Glyma10g35290.1
Glycine max
Glyma10g35290.1
N
0.743
Glyma11g14500.1
Glycine max
Glyma11g14500.1
N
0.780
Glyma11g14530.1
Glycine max
Glyma11g14530.1
N
0.783
Glyma11g14550.1
Glycine max
Glyma11g14550.1
N
0.783
Glyma12g06430.1
Glycine max
Glyma12g06430.1
N
0.787
Glyma12g06450.1
Glycine max
Glyma12g06450.1
N
0.787
Glyma13g00670.1
Glycine max
Glyma13g00670.1
N
0.707
Glyma15g04060.1
Glycine max
Glyma15g04060.1
N
0.781
Glyma15g17680.1
Glycine max
Glyma15g17680.1
N
0.718
Glyma20g32230.1
Glycine max
Glyma20g32230.1
N
0.742
GRMZM2G012964
Zea mays
GRMZM2G012964
N
0.753
GRMZM2G035118
Zea mays
GRMZM2G035118
N
0.713
GRMZM2G042623
Zea mays
GRMZM2G042623
N
0.760
GRMZM2G123537
Zea mays
GRMZM2G123537
N
0.753
GRMZM2G449123
Zea mays
GRMZM2G449123
N
0.705
GSVIVG00016236001
Vitis vinifera
GSVIVG00016236001
N
0.728
GSVIVG00016507001
Vitis vinifera
GSVIVG00016507001
N
0.801
GSVIVG00024918001
Vitis vinifera
GSVIVG00024918001
N
0.794
GSVIVG00029553001
Vitis vinifera
GSVIVG00029553001
N
0.721
GSVIVG00031557001
Vitis vinifera
GSVIVG00031557001
N
0.733
gw1.2.45.1
Selaginella moellendorfii
gw1.2.45.1
N
0.858
LOC_Os01g62650
Oryza sativa
LOC_Os01g62650
N
0.786
LOC_Os01g74030
Oryza sativa
LOC_Os01g74030
N
0.754
LOC_Os02g57390
Oryza sativa
LOC_Os02g57390
N
0.750
LOC_Os05g01910
Oryza sativa
LOC_Os05g01910
N
0.768
LOC_Os08g40830
Oryza sativa
LOC_Os08g40830
N
0.727
MDP0000176743
Malus x domestica
MDP0000176743
N
0.717
MDP0000191652
Malus x domestica
MDP0000191652
N
0.745
MDP0000265231
Malus x domestica
MDP0000265231
N
0.723
MDP0000277305
Malus x domestica
MDP0000277305
N
0.722
MDP0000313902
Malus x domestica
MDP0000313902
N
0.722
MDP0000314338
Malus x domestica
MDP0000314338
N
0.779
MDP0000319167
Malus x domestica
MDP0000319167
N
0.792
MDP0000776183
Malus x domestica
MDP0000776183
N
0.773
Medtr1g120450
Medicago truncatula
Medtr1g120450
N
0.740
Medtr2g117180
Medicago truncatula
Medtr2g117180
N
0.785
Medtr4g084270
Medicago truncatula
Medtr4g084270
N
0.783
Medtr5g087730
Medicago truncatula
Medtr5g087730
N
0.711
mgf006786m
Mimulus guttatus
mgf006786m
N
0.711
mgf011401m
Mimulus guttatus
mgf011401m
N
0.714
mgf015234m
Mimulus guttatus
mgf015234m
N
0.754
mgf015734m
Mimulus guttatus
mgf015734m
N
0.781
PK00601.1
Cannabis sativa
PK00601.1
N
0.791
PK01617.1
Cannabis sativa
PK01617.1
N
0.755
PK12245.1
Cannabis sativa
PK12245.1
N
0.723
PK21390.1
Cannabis sativa
PK21390.1
N
0.779
B9GJ97_POPTR
Populus trichocarpa
POPTR_0001s25020
N
0.760
B9HK27_POPTR
Populus trichocarpa
POPTR_0008s00490
N
0.708
XM_002311043.1
Populus trichocarpa
POPTR_0008s03630
N
0.746
B9HMK2_POPTR
Populus trichocarpa
POPTR_0008s05850
N
0.779
B9HPE1_POPTR
Populus trichocarpa
POPTR_0009s03980
N
0.764
B9HTG3_POPTR
Populus trichocarpa
POPTR_0010s20870
N
0.790
B9HUI2_POPTR
Populus trichocarpa
POPTR_0010s23250
N
0.739
ppa000626m
Prunus persica
ppa000626m
N
0.787
ppa000627m
Prunus persica
ppa000627m
N
0.788
ppa000731m
Prunus persica
ppa000731m
N
0.772
ppa000898m
Prunus persica
ppa000898m
N
0.734
ppa016404m
Prunus persica
ppa016404m
N
0.723
SB03G039600
Sorghum bicolor
Sb03g039600
N
0.786
SB04G037410
Sorghum bicolor
Sb04g037410
N
0.756
Sb07g026995
Sorghum bicolor
Sb07g026995
N
0.706
SB09G001090
Sorghum bicolor
Sb09g001090
N
0.756
XM_002884744.1
Arabidopsis lyrata
scaffold_301182.1
N
0.714
scaffold_4100004.1
Arabidopsis lyrata
scaffold_4100004.1
N
0.744