e_gw1.96.1.1 (Physcomitrella patens)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 e_gw1.96.1.1 T24757_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.96.1.1 PUF 801 835
e_gw1.96.1.1 PUF 837 871
e_gw1.96.1.1 PUF 873 908
e_gw1.96.1.1 PUF 909 943
e_gw1.96.1.1 PUF 945 977
e_gw1.96.1.1 PUF 982 1016
e_gw1.96.1.1 PUF 1018 1052
e_gw1.96.1.1 PUF 1065 1094

Links

Other PUF family RBPs
Other Physcomitrella patens RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.750
30143.m001162 Ricinus communis 30143.m001162 N 0.744
30143.m001164 Ricinus communis 30143.m001164 N 0.783
30169.m006300 Ricinus communis 30169.m006300 N 0.712
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.751
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.747
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.755
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.717
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.754
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.768
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.727
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.756
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.756
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.745
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.750
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.786
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.783
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.781
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.781
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.781
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.772
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.702
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.705
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.783
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.730
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.765
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.739
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.938
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.935
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.821
e_gw1.6.102.1 Micromonas pusilla e_gw1.6.102.1 N 0.710
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.841
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.744
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.747
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.725
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.743
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.780
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.783
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.783
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.787
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.787
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.707
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.781
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.718
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.742
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.753
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.713
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.760
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.753
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.705
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.728
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.801
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.794
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.721
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.733
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.858
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.786
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.754
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.750
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.768
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.727
MDP0000176743 Malus x domestica MDP0000176743 N 0.717
MDP0000191652 Malus x domestica MDP0000191652 N 0.745
MDP0000265231 Malus x domestica MDP0000265231 N 0.723
MDP0000277305 Malus x domestica MDP0000277305 N 0.722
MDP0000313902 Malus x domestica MDP0000313902 N 0.722
MDP0000314338 Malus x domestica MDP0000314338 N 0.779
MDP0000319167 Malus x domestica MDP0000319167 N 0.792
MDP0000776183 Malus x domestica MDP0000776183 N 0.773
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.740
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.785
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.783
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.711
mgf006786m Mimulus guttatus mgf006786m N 0.711
mgf011401m Mimulus guttatus mgf011401m N 0.714
mgf015234m Mimulus guttatus mgf015234m N 0.754
mgf015734m Mimulus guttatus mgf015734m N 0.781
PK00601.1 Cannabis sativa PK00601.1 N 0.791
PK01617.1 Cannabis sativa PK01617.1 N 0.755
PK12245.1 Cannabis sativa PK12245.1 N 0.723
PK21390.1 Cannabis sativa PK21390.1 N 0.779
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.760
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.708
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.746
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.779
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.764
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.790
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.739
ppa000626m Prunus persica ppa000626m N 0.787
ppa000627m Prunus persica ppa000627m N 0.788
ppa000731m Prunus persica ppa000731m N 0.772
ppa000898m Prunus persica ppa000898m N 0.734
ppa016404m Prunus persica ppa016404m N 0.723
SB03G039600 Sorghum bicolor Sb03g039600 N 0.786
SB04G037410 Sorghum bicolor Sb04g037410 N 0.756
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.706
SB09G001090 Sorghum bicolor Sb09g001090 N 0.756
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.714
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.744